Equivalence class NR_4.0_01303.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5FJC|1|A (rep) | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant C-2bU | X-ray diffraction | 1.71 | 2016-05-25 |
| 2 | 5FK4|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UU | X-ray diffraction | 2.43 | 2016-05-25 |
| 3 | 4B5R|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui K-t-7 | X-ray diffraction | 2.95 | 2013-01-30 |
| 4 | 5FK3|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CC | X-ray diffraction | 2.5 | 2016-05-25 |
| 5 | 5FK2|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GG | X-ray diffraction | 2.6 | 2016-05-25 |
| 6 | 5FKF|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UC | X-ray diffraction | 2.8 | 2016-05-25 |
| 7 | 5FK6|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CA | X-ray diffraction | 2.5 | 2016-05-25 |
| 8 | 5FK1|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UG | X-ray diffraction | 2.5 | 2016-05-25 |
| 9 | 5FKD|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UA | X-ray diffraction | 3 | 2016-05-25 |
| 10 | 5FKH|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CU | X-ray diffraction | 2.65 | 2016-05-25 |
| 11 | 5FKG|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CG | X-ray diffraction | 2.95 | 2016-05-25 |
| 12 | 5FKE|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GU | X-ray diffraction | 2.8 | 2016-05-25 |
| 13 | 5FK5|1|A | SAM riboswitch | SAM-I RIBOSWITCH | Caldanaerobacter subterraneus | Bacteria | RF00162 | SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is AA | X-ray diffraction | 3.32 | 2016-05-25 |
Release history
| Release | 8.0 | 7.0 | 9.0 | 9.1 | 9.2 | 9.3 | 9.4 | 9.5 | 9.6 | 9.7 | 9.8 | 9.9 | 9.10 | 9.11 | 9.12 | 9.13 | 9.14 | 9.15 | 9.16 | 9.17 | 9.18 | 9.19 | 9.20 | 9.21 | 9.22 | 9.23 | 9.24 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-04-05 | 2017-04-05 | 2017-10-26 | 2017-11-07 | 2017-12-02 | 2017-12-13 | 2017-12-21 | 2017-12-22 | 2018-01-04 | 2018-01-05 | 2018-01-10 | 2018-01-11 | 2018-01-12 | 2018-01-28 | 2018-04-01 | 2018-04-01 | 2018-09-14 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-05 | 2018-12-12 | 2018-12-19 | 2018-12-26 | 2019-01-02 | 2019-01-09 |
Parents
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5FKF|1|A | Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UC | X-RAY DIFFRACTION | 2.8 | 94 | ||
| 2 | 5FK1|1|A | Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UG | X-RAY DIFFRACTION | 2.5 | 94 | ||
| 3 | 5FK3|1|A | Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CC | X-RAY DIFFRACTION | 2.5 | 95 | ||
| 4 | 5FK2|1|A | Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GG | X-RAY DIFFRACTION | 2.6 | 94 | ||
| 5 | 5FKH|1|A | Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CU | X-RAY DIFFRACTION | 2.65 | 94 | ||
| 6 | 5FKD|1|A | Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UA | X-RAY DIFFRACTION | 3 | 94 | ||
| 7 | 5FK6|1|A | Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CA | X-RAY DIFFRACTION | 2.5 | 94 | ||
| 8 | 5FKE|1|A | Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is GU | X-RAY DIFFRACTION | 2.8 | 94 | ||
| 9 | 5FKG|1|A | Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is CG | X-RAY DIFFRACTION | 2.95 | 94 | ||
| 10 | 5FK5|1|A | Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is AA | X-RAY DIFFRACTION | 3.32 | 94 | ||
| 11 | 5FK4|1|A | Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant 3bn is UU | X-RAY DIFFRACTION | 2.43 | 93 | ||
| 12 | 4B5R|1|A | Title: SAM-I riboswitch bearing the H. marismortui K-t-7 | X-RAY DIFFRACTION | 2.95 | 94 | ||
| 13 | 5FJC|1|A | Title: SAM-I riboswitch bearing the H. marismortui Kt-7 variant C-2bU | X-RAY DIFFRACTION | 1.71 | 96 |
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