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Equivalence class NR_4.0_00888.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
12BU1|1|S (rep)5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *5BU*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (5BRU -5) COMPLEXX-ray diffraction2.22005-08-18
22C4Z|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*SUR *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-ray diffraction2.62006-01-05
32C4Y|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-ray diffraction2.682006-01-05
42C4Q|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *PYO*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2ONE -5) COMPLEXX-ray diffraction2.382005-11-07
52BU1|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *5BU*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (5BRU -5) COMPLEXX-ray diffraction2.22005-08-18
62C4Q|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *PYO*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2ONE -5) COMPLEXX-ray diffraction2.382005-11-07
71ZDK|1|SRNA (5'-R(P*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3')STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-ray diffraction2.861998-12-07
82C4Z|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*SUR *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-ray diffraction2.62006-01-05
92IZ9|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*U ONEP *AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (4ONE -5) COMPLEXX-ray diffraction2.852006-07-27
102BQ5|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2 (N87AE89K mutant) - RNA hairpin complexX-ray diffraction2.912006-03-22
112BNY|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2 (N87A mutant) - RNA hairpin complexX-ray diffraction32006-03-22
122C51|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *GP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (G -5) COMPLEXX-ray diffraction2.82006-01-05
132C4Y|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *SUR*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-ray diffraction2.682006-01-05
142BQ5|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2 (N87AE89K mutant) - RNA hairpin complexX-ray diffraction2.912006-03-22
151ZDI|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.71997-04-21
162IZ8|1|RRNA, (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*CP*UP*CP* AP*CP*CP*CP*AP*UP*GP*U)-3')Escherichia virus MS2VirusesMS2-RNA HAIRPIN (C-7) COMPLEXX-ray diffraction3.32006-07-27
171AQ3|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-ray diffraction2.81997-12-24
181AQ4|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')Escherichia virus MS2VirusesSTRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-ray diffraction31997-12-24
192B2G|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3'MS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsidX-ray diffraction3.022006-05-09
202B2E|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3'RNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsidX-ray diffraction3.152006-05-09
211ZDH|1|RRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*U P*GP*U)-3')synthetic constructSyntheticMS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.71997-04-21
222IZM|1|R5'-R(*AP*CP*AP*UP*GP*CP*GP*GP*AP*UP *CP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (C-10) COMPLEXX-ray diffraction2.72007-07-03
231ZDI|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.71997-04-21
241ZDH|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*U P*GP*U)-3')synthetic constructSyntheticMS2 COAT PROTEIN/RNA COMPLEXX-ray diffraction2.71997-04-21
252IZM|1|S5'-R(*AP*CP*AP*UP*GP*CP*GP*GP*AP*UP *CP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (C-10) COMPLEXX-ray diffraction2.72007-07-03
262IZ8|1|SRNA, (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*CP*UP*CP* AP*CP*CP*CP*AP*UP*GP*U)-3')Escherichia virus MS2VirusesMS2-RNA HAIRPIN (C-7) COMPLEXX-ray diffraction3.32006-07-27
272BNY|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *UP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2 (N87A mutant) - RNA hairpin complexX-ray diffraction32006-03-22
282C50|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *AP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (A -5) COMPLEXX-ray diffraction2.652006-01-05
292C51|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *GP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (G -5) COMPLEXX-ray diffraction2.82006-01-05
302C50|1|R5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP *AP*AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (A -5) COMPLEXX-ray diffraction2.652006-01-05
311AQ4|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')Escherichia virus MS2VirusesSTRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-ray diffraction31997-12-24
322IZ9|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*U ONEP *AP*CP*CP*CP*AP*UP*GP*U)-3'Escherichia virus MS2VirusesMS2-RNA HAIRPIN (4ONE -5) COMPLEXX-ray diffraction2.852006-07-27
332B2E|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3'RNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsidX-ray diffraction3.152006-05-09
342B2G|1|S5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*UP*GP*U)-3'MS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsidX-ray diffraction3.022006-05-09
351ZDK|1|RRNA (5'-R(P*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*CP*AP*UP*GP*U)-3')STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-ray diffraction2.861998-12-07
361AQ3|1|SRNA (5'-R(*AP*CP*AP*UP*GP*AP*GP*GP*AP*UP*UP*AP*CP*CP*CP*AP*U P*GP*U)-3')BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-ray diffraction2.81997-12-24

Release history

Release2.03.04.05.0
Date2014-12-052016-07-252016-07-252016-07-25

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_00888.1NR_4.0_63549.16.0(2) 2BU1|1|R, 2BU1|1|S(34) 2B2G|1|R, 2IZ8|1|R, 2B2E|1|R, 2C51|1|R, 1ZDH|1|S, 2C4Y|1|S, 1AQ4|1|S, 2C4Q|1|S, 2BNY|1|R, 2IZ9|1|R, 1ZDI|1|S, 2C4Z|1|S, 1AQ3|1|R, 2BQ5|1|R, 2IZM|1|R, 1ZDK|1|S, 2C50|1|S, 1AQ4|1|R, 2C4Q|1|R, 2B2E|1|S, 2C51|1|S, 1ZDH|1|R, 2C4Y|1|R, 2B2G|1|S, 2IZ8|1|S, 1ZDI|1|R, 2C4Z|1|R, 2BNY|1|S, 2IZ9|1|S, 1ZDK|1|R, 2C50|1|R, 1AQ3|1|S, 2BQ5|1|S, 2IZM|1|S(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
11AQ3|1|RTitle: BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.816
22BNY|1|RTitle: MS2 (N87A mutant) - RNA hairpin complexX-RAY DIFFRACTION315
32C50|1|RTitle: MS2-RNA HAIRPIN (A -5) COMPLEXX-RAY DIFFRACTION2.6514
42C51|1|RTitle: MS2-RNA HAIRPIN (G -5) COMPLEXX-RAY DIFFRACTION2.815
52B2G|1|RTitle: MS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsidX-RAY DIFFRACTION3.0216
61ZDH|1|STitle: MS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.713
71ZDK|1|STitle: STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-RAY DIFFRACTION2.8619
81AQ4|1|STitle: STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-RAY DIFFRACTION314
91ZDI|1|STitle: RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.713
101AQ3|1|STitle: BACTERIOPHAGE MS2 CAPSID PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.812
112IZM|1|RTitle: MS2-RNA HAIRPIN (C-10) COMPLEXX-RAY DIFFRACTION2.713
121ZDK|1|RTitle: STRUCTURE OF BACTERIOPHAGE COAT PROTEIN-LOOP RNA COMPLEXX-RAY DIFFRACTION2.8619
131ZDH|1|RTitle: MS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.713
142C4Q|1|RTitle: MS2-RNA HAIRPIN (2ONE -5) COMPLEXX-RAY DIFFRACTION2.3816
152BU1|1|RTitle: MS2-RNA HAIRPIN (5BRU -5) COMPLEXX-RAY DIFFRACTION2.216
162IZ8|1|RTitle: MS2-RNA HAIRPIN (C-7) COMPLEXX-RAY DIFFRACTION3.316
172IZ8|1|STitle: MS2-RNA HAIRPIN (C-7) COMPLEXX-RAY DIFFRACTION3.313
182IZM|1|STitle: MS2-RNA HAIRPIN (C-10) COMPLEXX-RAY DIFFRACTION2.713
192C50|1|STitle: MS2-RNA HAIRPIN (A -5) COMPLEXX-RAY DIFFRACTION2.6513
202BU1|1|STitle: MS2-RNA HAIRPIN (5BRU -5) COMPLEXX-RAY DIFFRACTION2.216
212C4Q|1|STitle: MS2-RNA HAIRPIN (2ONE -5) COMPLEXX-RAY DIFFRACTION2.3816
222C51|1|STitle: MS2-RNA HAIRPIN (G -5) COMPLEXX-RAY DIFFRACTION2.813
232C4Z|1|STitle: MS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-RAY DIFFRACTION2.611
242C4Y|1|STitle: MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-RAY DIFFRACTION2.6812
252BNY|1|STitle: MS2 (N87A mutant) - RNA hairpin complexX-RAY DIFFRACTION313
262BQ5|1|STitle: MS2 (N87AE89K mutant) - RNA hairpin complexX-RAY DIFFRACTION2.9117
272B2G|1|STitle: MS2 Wild-type RNA stemloop complexed with an N87S mutant MS2 capsidX-RAY DIFFRACTION3.0215
282B2E|1|RTitle: RNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsidX-RAY DIFFRACTION3.1516
292B2E|1|STitle: RNA stemloop from bacteriophage MS2 complexed with an N87S,E89K mutant MS2 capsidX-RAY DIFFRACTION3.1514
301ZDI|1|RTitle: RNA BACTERIOPHAGE MS2 COAT PROTEIN/RNA COMPLEXX-RAY DIFFRACTION2.716
311AQ4|1|RTitle: STRUCTURE OF A MS2 COAT PROTEIN MUTANT IN COMPLEX WITH AN RNA OPERATORX-RAY DIFFRACTION316
322BQ5|1|RTitle: MS2 (N87AE89K mutant) - RNA hairpin complexX-RAY DIFFRACTION2.9119
332C4Y|1|RTitle: MS2-RNA HAIRPIN (2THIOURACIL-5) COMPLEXX-RAY DIFFRACTION2.6816
342C4Z|1|RTitle: MS2-RNA HAIRPIN (2SU -5-6) COMPLEXX-RAY DIFFRACTION2.615
352IZ9|1|RTitle: MS2-RNA HAIRPIN (4ONE -5) COMPLEXX-RAY DIFFRACTION2.8514
362IZ9|1|STitle: MS2-RNA HAIRPIN (4ONE -5) COMPLEXX-RAY DIFFRACTION2.8514

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