Equivalence class NR_2.5_18031.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4AFY|1|D (rep) | 5'-R(*GP*GP)-3' | synthetic construct | Synthetic | Crystal structure of the FimX EAL domain in complex with reaction product pGpG | X-ray diffraction | 2.01 | 2013-01-09 | ||
| 2 | 4AFY|1|C | 5'-R(*GP*GP)-3' | synthetic construct | Synthetic | Crystal structure of the FimX EAL domain in complex with reaction product pGpG | X-ray diffraction | 2.01 | 2013-01-09 | ||
| 3 | 3U2E|1|C | RNA (5'-R(P*GP*G)-3') | EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++ | X-ray diffraction | 2.32 | 2011-10-12 | ||||
| 4 | 3U2E|1|D | RNA (5'-R(P*GP*G)-3') | EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++ | X-ray diffraction | 2.32 | 2011-10-12 | ||||
| 5 | 1UVK|1|B | 5'-D(*GP*GP)-3' | The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase phi6p2 dead-end complex | X-ray diffraction | 2.45 | 2004-02-19 | ||||
| 6 | 1UVK|1|D | 5'-D(*GP*GP)-3' | The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase phi6p2 dead-end complex | X-ray diffraction | 2.45 | 2004-02-19 | ||||
| 7 | 1UVK|1|F | 5'-D(*GP*GP)-3' | The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase phi6p2 dead-end complex | X-ray diffraction | 2.45 | 2004-02-19 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_2.5_18031.1 | NR_all_14513.1 | 3.0 | (1) 3U2E|1|D | (6) 1UVK|1|B, 4AFY|1|C, 3U2E|1|C, 1UVK|1|F, 1UVK|1|D, 4AFY|1|D | (0) |
| NR_2.5_18031.1 | NR_all_14650.1 | 3.0 | (1) 1UVK|1|D | (6) 3U2E|1|D, 3U2E|1|C, 1UVK|1|F, 4AFY|1|D, 1UVK|1|B, 4AFY|1|C | (0) |
| NR_2.5_18031.1 | NR_all_23758.1 | 3.0 | (1) 3U2E|1|C | (6) 1UVK|1|D, 4AFY|1|D, 1UVK|1|B, 4AFY|1|C, 3U2E|1|D, 1UVK|1|F | (0) |
| NR_2.5_18031.1 | NR_all_24053.1 | 3.0 | (1) 4AFY|1|C | (6) 1UVK|1|B, 3U2E|1|D, 3U2E|1|C, 1UVK|1|F, 1UVK|1|D, 4AFY|1|D | (0) |
| NR_2.5_18031.1 | NR_all_57276.1 | 3.0 | (1) 4AFY|1|D | (6) 3U2E|1|C, 1UVK|1|F, 1UVK|1|D, 4AFY|1|C, 1UVK|1|B, 3U2E|1|D | (0) |
| NR_2.5_18031.1 | NR_all_58712.1 | 3.0 | (1) 1UVK|1|B | (6) 3U2E|1|C, 1UVK|1|F, 4AFY|1|D, 1UVK|1|D, 4AFY|1|C, 3U2E|1|D | (0) |
| NR_2.5_18031.1 | NR_all_95399.1 | 3.0 | (1) 1UVK|1|F | (6) 4AFY|1|D, 1UVK|1|B, 4AFY|1|C, 3U2E|1|D, 3U2E|1|C, 1UVK|1|D | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1UVK|1|F | Title: The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase phi6p2 dead-end complex | X-RAY DIFFRACTION | 2.45 | 1 | ||
| 2 | 3U2E|1|D | Title: EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++ | X-RAY DIFFRACTION | 2.32 | 2 | ||
| 3 | 3U2E|1|C | Title: EAL domain of phosphodiesterase PdeA in complex with 5'-pGpG and Mg++ | X-RAY DIFFRACTION | 2.32 | 2 | ||
| 4 | 1UVK|1|D | Title: The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase phi6p2 dead-end complex | X-RAY DIFFRACTION | 2.45 | 1 | ||
| 5 | 4AFY|1|C | Title: Crystal structure of the FimX EAL domain in complex with reaction product pGpG | X-RAY DIFFRACTION | 2.01 | 2 | ||
| 6 | 4AFY|1|D | Title: Crystal structure of the FimX EAL domain in complex with reaction product pGpG | X-RAY DIFFRACTION | 2.01 | 2 | ||
| 7 | 1UVK|1|B | Title: The structural basis for RNA specificity and Ca2+ inhibition of an RNA-dependent RNA polymerase phi6p2 dead-end complex | X-RAY DIFFRACTION | 2.45 | 1 |
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