Representative Sets of RNA 3D Structures
Release 9.7, 2018-01-05
Exact match 87;
| # | Equivalence class | Representative | Resolution | Nts | Class members | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | NR_1.5_70469.1 Exact match Bacillus subtilis | 4FEN|1|B (4FEN)
| 1.4 Å | 65 | (4) 4FEN|1|B, 4FEJ|1|B, 4FE5|1|B, 2XNW|1|A | function,purine-compound riboswitch,riboswitch | NULL |
| 2 | NR_1.5_50429.1 Exact match | 1L2X|1|A (1L2X)
| 1.3 Å | 38 | (1) 1L2X|1|A | frameshifting element,function,translation regulating | NULL |
| 3 | NR_1.5_96660.1 Exact match synthetic construct | 4RBQ|1|A (4RBQ)
| 1.1 Å | 32 | (2) 4RBQ|1|A, 5DA6|1|A | A-form double helix,double helix,structure | NULL |
| 4 | NR_1.5_15812.3 Exact match | 4NLF|1|A (4NLF)
| 1.0 Å | 31 | (16) 4NLF|1|A, 5D99|1|A, 1Q9A|1|A, 4NMG|1|A, 3DW4|1|A, 3DW6|1|A, 4Y27|1|A, 3DVZ|1|A, 4NXH|1|A, 3S7C|1|A, 3DW5|1|A, 3DW7|1|A, 483D|1|A, 3S8U|1|A, 1MSY|1|A, 480D|1|A | function,protein synthesis,ribosomal RNA | NULL |
| 5 | NR_1.5_86036.1 Exact match | 2A43|1|A (2A43)
| 1.3 Å | 26 | (1) 2A43|1|A | frameshifting element,function,translation regulating | NULL |
| 6 | NR_1.5_56730.1 Exact match Leishmania | 4K31|1|B+4K31|1|C (4K31)
| 1.4 Å | 22 | (1) 4K31|1|B+4K31|1|C | A-form double helix,double helix,function,protein synthesis,ribosomal RNA,structure | NULL |
| 7 | NR_1.5_75928.1 Exact match Saccharomyces | 5C5W|1|A (5C5W)
| 1.3 Å | 22 | (1) 5C5W|1|A | A-form double helix,double helix,structure | NULL |
| 8 | NR_1.5_72750.1 Exact match Homo sapiens | 5EW4|1|B+5EW4|1|A (5EW4)
| 1.5 Å | 21 | (1) 5EW4|1|B+5EW4|1|A | A-form double helix,double helix,structure | NULL |
| 9 | NR_1.5_53396.1 Exact match | 4LGT|1|E (4LGT)
| 1.3 Å | 20 | (2) 4LGT|1|E, 4LGT|1|F | function,protein synthesis,ribosomal RNA | enzyme,isomerase |
| 10 | NR_1.5_23520.1 Exact match | 3SJ2|1|A+3SJ2|1|B (3SJ2)
| 1.4 Å | 19 | (1) 3SJ2|1|A+3SJ2|1|B | NULL | NULL |
| 11 | NR_1.5_84048.1 Exact match | 1F27|1|A (1F27)
| 1.3 Å | 19 | (1) 1F27|1|A | aptamer,function | NULL |
| 12 | NR_1.5_05283.1 Exact match Homo sapiens | 5EME|1|A (5EME)
| 1.2 Å | 18 | (1) 5EME|1|A | A-form double helix,double helix,structure | NULL |
| 13 | NR_1.5_84464.1 Exact match | 2Y8Y|1|B (2Y8Y)
| 1.4 Å | 18 | (1) 2Y8Y|1|B | NULL | CRISPR-Cas,enzyme,hydrolase,nuclease,regulatory |
| 14 | NR_1.5_44091.3 Exact match | 3GLP|1|B+3GLP|1|A (3GLP)
| 1.2 Å | 17 | (3) 3GLP|1|B+3GLP|1|A, 3GLP|1|C+3GLP|1|D, 3GLP|1|E | A-form double helix,double helix,structure | NULL |
| 15 | NR_1.5_50098.1 Exact match | 3ND3|1|A (3ND3)
| 1.4 Å | 16 | (1) 3ND3|1|A | double helix,structure | NULL |
| 16 | NR_1.5_68228.1 Exact match synthetic construct | 4RC0|1|A (4RC0)
| 1.1 Å | 16 | (1) 4RC0|1|A | A-form double helix,double helix,structure | NULL |
| 17 | NR_1.5_92456.1 Exact match synthetic construct | 4RBZ|1|A (4RBZ)
| 1.2 Å | 16 | (1) 4RBZ|1|A | A-form double helix,double helix,structure | NULL |
| 18 | NR_1.5_28691.1 Exact match synthetic construct | 5DO5|1|A (5DO5)
| 1.2 Å | 15 | (1) 5DO5|1|A | A-form double helix,double helix,structure | NULL |
| 19 | NR_1.5_35419.1 Exact match | 3R1D|1|E (3R1D)
| 1.5 Å | 15 | (1) 3R1D|1|E | A-form double helix,double helix,structure | NULL |
| 20 | NR_1.5_66265.1 Exact match Homo sapiens | 5EMF|1|A (5EMF)
| 1.1 Å | 15 | (1) 5EMF|1|A | A-form double helix,double helix,structure | NULL |
| 21 | NR_1.5_73699.1 Exact match | 3CZW|1|X (3CZW)
| 1.4 Å | 15 | (1) 3CZW|1|X | catalytic,function,hammerhead ribozyme | NULL |
| 22 | NR_1.5_83291.1 Exact match | 397D|1|A+397D|1|B (397D)
| 1.3 Å | 15 | (1) 397D|1|A+397D|1|B | A-form double helix,double helix,structure | NULL |
| 23 | NR_1.5_07044.1 Exact match | 4O41|1|C+4O41|1|D (4O41)
| 1.2 Å | 13 | (2) 4O41|1|C+4O41|1|D, 4O41|1|B+4O41|1|A | A-form double helix,double helix,structure | NULL |
| 24 | NR_1.5_21352.1 Exact match synthetic construct | 4RBY|1|A (4RBY)
| 1.2 Å | 13 | (1) 4RBY|1|A | A-form double helix,double helix,structure | NULL |
| 25 | NR_1.5_26442.1 Exact match synthetic construct | 5L00|1|A+5L00|1|B (5L00)
| 1.3 Å | 13 | (2) 5L00|1|A+5L00|1|B, 5L00|1|C+5L00|1|D | A-form double helix,catalytic,double helix,function,self-replicating,structure | NULL |
| 26 | NR_1.5_34440.1 Exact match synthetic construct | 5JAJ|1|X+5JAJ|1|Y (5JAJ)
| 1.5 Å | 13 | (1) 5JAJ|1|X+5JAJ|1|Y | A-form double helix,double helix,structure | enzyme,helicase,hydrolase |
| 27 | NR_1.5_75616.3 Exact match | 3R1D|1|A+3R1D|1|B (3R1D)
| 1.5 Å | 13 | (2) 3R1D|1|A+3R1D|1|B, 3R1D|1|C+3R1D|1|D | A-form double helix,double helix,structure | NULL |
| 28 | NR_1.5_71129.1 Exact match | 2Q1R|1|A (2Q1R)
| 1.1 Å | 12 | (1) 2Q1R|1|A | A-form double helix,double helix,structure | NULL |
| 29 | NR_1.5_73790.1 Exact match | 2R1S|1|A+2R1S|1|B (2R1S)
| 1.4 Å | 12 | (3) 2R1S|1|A+2R1S|1|B, 2R22|1|A+2R22|1|B, 2R20|1|A+2R20|1|B | A-form double helix,double helix,structure | NULL |
| 30 | NR_1.5_93557.1 Exact match Escherichia coli | 354D|1|A+354D|1|B (354D)
| 1.5 Å | 12 | (1) 354D|1|A+354D|1|B | double helix,structure | NULL |
| 31 | NR_1.5_00273.1 Exact match | 2Q1O|1|C+2Q1O|1|D (2Q1O)
| 1.1 Å | 11 | (2) 2Q1O|1|C+2Q1O|1|D, 2Q1O|1|A+2Q1O|1|B | A-form double helix,double helix,structure | NULL |
| 32 | NR_1.5_76006.1 Exact match | 2ASB|1|B (2ASB)
| 1.5 Å | 11 | (1) 2ASB|1|B | function,protein synthesis,ribosomal RNA | RNA-binding transcription factor,regulatory,transcription |
| 33 | NR_1.5_76020.1 Exact match | 1QCU|1|A+1QCU|1|B (1QCU)
| 1.2 Å | 11 | (1) 1QCU|1|A+1QCU|1|B | A-form double helix,double helix,structure | NULL |
| 34 | NR_1.5_92134.1 Exact match synthetic construct | 5AY2|1|A+5AY2|1|B (5AY2)
| 1.3 Å | 11 | (3) 5AY2|1|A+5AY2|1|B, 5AY3|1|A+5AY3|1|B, 5AY2|1|C+5AY2|1|D | A-form double helix,double helix,structure | NULL |
| 35 | NR_1.5_93811.1 Exact match | 4JRD|1|B (4JRD)
| 1.0 Å | 11 | (2) 4JRD|1|B, 4JRD|1|A | parallel helix,structure | NULL |
| 36 | NR_1.5_99273.1 Exact match | 1QCU|1|C+1QCU|1|D (1QCU)
| 1.2 Å | 11 | (1) 1QCU|1|C+1QCU|1|D | A-form double helix,double helix,structure | NULL |
| 37 | NR_1.5_14523.1 Exact match | 3R1E|1|A+3R1E|1|B (3R1E)
| 1.0 Å | 10 | (1) 3R1E|1|A+3R1E|1|B | A-form double helix,double helix,structure | NULL |
| 38 | NR_1.5_20087.1 Exact match Tobacco virtovirus 1 | 4OQ9|1|U (4OQ9)
| 1.5 Å | 10 | (16) 4OQ9|1|U, 4OQ9|1|T+4OQ9|1|i, 4OQ9|1|R+4OQ9|1|g, 4OQ9|1|c, 4OQ9|1|Q, 4OQ9|1|S+4OQ9|1|h, 4OQ9|1|W, 4OQ9|1|Y+4OQ9|1|n, 4OQ9|1|a, 4OQ9|1|d, 4OQ9|1|V, 4OQ9|1|P+4OQ9|1|e, 4OQ9|1|X+4OQ9|1|m, 4OQ9|1|Z, 4OQ9|1|b, 4OQ8|1|B+4OQ8|1|C | NULL | structural,virus |
| 39 | NR_1.5_22049.1 Exact match synthetic construct | 5V0J|1|A+5V0J|1|B (5V0J)
| 1.5 Å | 10 | (1) 5V0J|1|A+5V0J|1|B | A-form double helix,double helix,structure | NULL |
| 40 | NR_1.5_43759.1 Exact match | 3NJ6|1|A (3NJ6)
| 1.0 Å | 10 | (1) 3NJ6|1|A | A-form double helix,double helix,structure | NULL |
| 41 | NR_1.5_47594.1 Exact match | 1PJG|1|A (1PJG)
| 1.2 Å | 10 | (3) 1PJG|1|A, 1PJO|1|A, 1G4Q|1|A | A-form double helix,double helix,structure | NULL |
| 42 | NR_1.5_67226.1 Exact match Endothia gyrosa | 4PCO|1|A+4PCO|1|B (4PCO)
| 1.3 Å | 10 | (3) 4PCO|1|A+4PCO|1|B, 4PCO|1|E, 4PCO|1|C+4PCO|1|D | double helix,structure | NULL |
| 43 | NR_1.5_74457.1 Exact match | 5TDJ|1|A (5TDJ)
| 1.5 Å | 10 | (5) 5TDJ|1|A, 5TDJ|1|B, 5TDK|1|A+5TDK|1|B, 4MSR|1|A+4MSR|1|B, 4MS9|1|A | A-form double helix,double helix,structure | NULL |
| 44 | NR_1.5_93801.3 Exact match | 3OK4|1|N (3OK4)
| 1.2 Å | 10 | (15) 3OK4|1|N, 3OK4|1|D, 3OK4|1|L, 3OK4|1|Z, 3OK4|1|4, 3OK4|1|V, 3OK4|1|X, 3OK4|1|P, 3OK4|1|F, 3OK4|1|H, 3OK4|1|J, 3OK4|1|R, 3OK4|1|T, 3OK4|1|2, 3OK4|1|B | A-form double helix,double helix,structure | NULL |
| 45 | NR_1.5_97130.1 Exact match Tobacco virtovirus 1 | 4OQ9|1|p (4OQ9)
| 1.5 Å | 10 | (9) 4OQ9|1|p, 4OQ9|1|k, 4OQ9|1|o, 4OQ9|1|r, 4OQ9|1|j, 4OQ9|1|q, 4OQ9|1|f, 4OQ9|1|l, 4OQ9|1|s | NULL | structural,virus |
| 46 | NR_1.5_32601.1 Exact match synthetic construct | 5HBY|1|A (5HBY)
| 1.2 Å | 9 | (1) 5HBY|1|A | A-form double helix,catalytic,double helix,function,self-replicating,structure | NULL |
| 47 | NR_1.5_57499.1 Exact match synthetic construct | 4U6K|1|A (4U6K)
| 1.5 Å | 9 | (2) 4U6K|1|A, 4U6K|1|C | A-form double helix,double helix,structure | NULL |
| 48 | NR_1.5_80985.1 Exact match synthetic construct | 5HNJ|1|A+5HNJ|1|B (5HNJ)
| 1.2 Å | 9 | (6) 5HNJ|1|A+5HNJ|1|B, 5HNJ|1|C+5HNJ|1|D, 5HN2|1|B+5HN2|1|A, 5HNJ|1|E+5HNJ|1|F, 5HN2|1|C+5HN2|1|D, 5HN2|1|E+5HN2|1|F | A-form double helix,double helix,structure | NULL |
| 49 | NR_1.5_04430.1 Exact match | 3G9Y|1|C (3G9Y)
| 1.4 Å | 8 | (1) 3G9Y|1|C | NULL | post-transcriptional,regulatory,splicing |
| 50 | NR_1.5_04432.1 Exact match | 4MDX|1|C (4MDX)
| 1.5 Å | 8 | (1) 4MDX|1|C | NULL | enzyme,hydrolase,nuclease |
| 51 | NR_1.5_07940.1 Exact match | 259D|1|A+259D|1|B (259D)
| 1.5 Å | 8 | (1) 259D|1|A+259D|1|B | A-form double helix,double helix,structure | NULL |
| 52 | NR_1.5_26612.1 Exact match | 2G91|1|A+2G91|1|B (2G91)
| 1.5 Å | 8 | (1) 2G91|1|A+2G91|1|B | A-form double helix,double helix,structure | NULL |
| 53 | NR_1.5_43602.1 Exact match | 1J9H|1|A+1J9H|1|B (1J9H)
| 1.4 Å | 8 | (2) 1J9H|1|A+1J9H|1|B, 1J9H|1|C+1J9H|1|D | NULL | NULL |
| 54 | NR_1.5_60862.1 Exact match Drosophila melanogaster | 5KLA|1|B (5KLA)
| 1.1 Å | 8 | (1) 5KLA|1|B | NULL | post-transcriptional,regulatory |
| 55 | NR_1.5_89165.1 Exact match synthetic construct | 4U3L|1|A+4U3L|1|B (4U3L)
| 1.5 Å | 8 | (2) 4U3L|1|A+4U3L|1|B, 4U78|1|A+4U78|1|B | A-form double helix,double helix,structure | NULL |
| 56 | NR_1.5_89221.3 Exact match | 2G3S|1|I+2G3S|1|J (2G3S)
| 1.5 Å | 8 | (5) 2G3S|1|I+2G3S|1|J, 2G3S|1|G+2G3S|1|H, 2G3S|1|C+2G3S|1|D, 2G3S|1|A+2G3S|1|B, 2G3S|1|E+2G3S|1|F | A-form double helix,double helix,structure | NULL |
| 57 | NR_1.5_97285.1 Exact match | 3PF4|1|R (3PF4)
| 1.4 Å | 8 | (1) 3PF4|1|R | NULL | regulatory,transcription |
| 58 | NR_1.5_02752.1 Exact match Homo sapiens | 2VUQ|1|A+2VUQ|1|B (2VUQ)
| 1.2 Å | 7 | (1) 2VUQ|1|A+2VUQ|1|B | A-form double helix,double helix,structure | NULL |
| 59 | NR_1.5_08365.1 Exact match | 435D|1|C+435D|1|D (435D)
| 1.4 Å | 7 | (2) 435D|1|C+435D|1|D, 435D|1|A+435D|1|B | A-form double helix,double helix,structure | NULL |
| 60 | NR_1.5_12476.1 Exact match synthetic construct | 4U34|1|B+4U34|1|A (4U34)
| 1.4 Å | 7 | (1) 4U34|1|B+4U34|1|A | A-form double helix,double helix,structure | NULL |
| 61 | NR_1.5_38438.1 Exact match synthetic construct | 4JAH|1|A+4JAH|1|B (4JAH)
| 1.5 Å | 7 | (3) 4JAH|1|A+4JAH|1|B, 4JAH|1|C+4JAH|1|D, 4JAH|1|E+4JAH|1|F | NULL | NULL |
| 62 | NR_1.5_38873.1 Exact match | 464D|1|A+464D|1|B (464D)
| 1.2 Å | 7 | (6) 464D|1|A+464D|1|B, 464D|1|C+464D|1|D, 466D|1|C+466D|1|D, 466D|1|A+466D|1|B, 434D|1|C+434D|1|D, 434D|1|A+434D|1|B | A-form double helix,double helix,structure | NULL |
| 63 | NR_1.5_59951.1 Exact match | 3GVN|1|A+3GVN|1|B (3GVN)
| 1.2 Å | 7 | (1) 3GVN|1|A+3GVN|1|B | A-form double helix,double helix,structure | NULL |
| 64 | NR_1.5_64337.1 Exact match Mus musculus | 2XS2|1|B (2XS2)
| 1.4 Å | 7 | (1) 2XS2|1|B | NULL | regulatory,translation |
| 65 | NR_1.5_69242.1 Exact match | 3JXQ|1|L+3JXQ|1|K (3JXQ)
| 1.5 Å | 7 | (4) 3JXQ|1|L+3JXQ|1|K, 3JXQ|1|B+3JXQ|1|A, 3JXR|1|A+3JXR|1|B, 3JXR|1|K | A-form double helix,double helix,structure | NULL |
| 66 | NR_1.5_78848.1 Exact match | 1WPU|1|C (1WPU)
| 1.5 Å | 7 | (2) 1WPU|1|C, 1WPU|1|D | NULL | RNA-binding transcription factor,regulatory,transcription |
| 67 | NR_1.5_87121.1 Exact match | 4QM6|1|D (4QM6)
| 1.5 Å | 7 | (2) 4QM6|1|D, 4QM6|1|C | NULL | enzyme,kinase,transferase |
| 68 | NR_1.5_93687.1 Exact match Homo sapiens | 2V7R|1|A+2V7R|1|B (2V7R)
| 1.2 Å | 7 | (1) 2V7R|1|A+2V7R|1|B | A-form double helix,double helix,function,protein synthesis,structure,transfer RNA | NULL |
| 69 | NR_1.5_09046.1 Exact match | 4RKV|1|A (4RKV)
| 0.9 Å | 6 | (14) 4RKV|1|A, 4RNE|1|B, 4RJ1|1|A, 4RNE|1|C, 4RNE|1|E, 4RNE|1|D, 4RNE|1|A, 4RNE|1|G, 4RNE|1|F, 4RNE|1|H, 4XK0|1|C, 1J8G|1|A, 1J8G|1|C, 1J8G|1|D | quadruplex,structure | NULL |
| 70 | NR_1.5_13992.1 Exact match | 3P4C|1|A (3P4C)
| 1.2 Å | 6 | (1) 3P4C|1|A | A-form double helix,double helix,structure | NULL |
| 71 | NR_1.5_40902.3 Exact match synthetic construct | 5D8T|1|A+5D8T|1|B (5D8T)
| 1.2 Å | 6 | (1) 5D8T|1|A+5D8T|1|B | A-form double helix,double helix,structure | NULL |
| 72 | NR_1.5_48074.1 Exact match synthetic construct | 4XK0|1|A (4XK0)
| 1.1 Å | 6 | (1) 4XK0|1|A | quadruplex,structure | NULL |
| 73 | NR_1.5_60810.1 Exact match | 3PEY|1|B (3PEY)
| 1.4 Å | 6 | (3) 3PEY|1|B, 3PEW|1|B, 4ALP|1|E | NULL | enzyme,helicase,hydrolase,post-transcriptional,regulatory,splicing |
| 74 | NR_1.5_73901.1 Exact match | 4RKV|1|B (4RKV)
| 0.9 Å | 6 | (2) 4RKV|1|B, 1J8G|1|B | quadruplex,structure | NULL |
| 75 | NR_1.5_78734.1 Exact match synthetic construct | 4RJ1|1|B (4RJ1)
| 0.9 Å | 6 | (1) 4RJ1|1|B | quadruplex,structure | NULL |
| 76 | NR_1.5_88825.1 Exact match | 3HGA|1|X (3HGA)
| 1.3 Å | 6 | (2) 3HGA|1|X, 1OSU|1|A | NULL | NULL |
| 77 | NR_1.5_22496.3 Exact match | 1J6S|1|A (1J6S)
| 1.4 Å | 5 | (4) 1J6S|1|A, 1J6S|1|C, 1J6S|1|D, 1J6S|1|B | quadruplex,structure | NULL |
| 78 | NR_1.5_41627.1 Exact match Mus musculus | 2XS7|1|B (2XS7)
| 1.5 Å | 5 | (1) 2XS7|1|B | NULL | regulatory,translation |
| 79 | NR_1.5_79905.1 Exact match | 1MDG|1|A (1MDG)
| 1.5 Å | 5 | (1) 1MDG|1|A | quadruplex,structure | NULL |
| 80 | NR_1.5_90693.1 Exact match | 1P79|1|A (1P79)
| 1.1 Å | 5 | (1) 1P79|1|A | parallel helix,structure | NULL |
| 81 | NR_1.5_08290.1 Exact match | 2GRB|1|F (2GRB)
| 1.4 Å | 4 | (8) 2GRB|1|F, 2GRB|1|A, 2GRB|1|C, 2GRB|1|B, 2GRB|1|E, 2GRB|1|H, 2GRB|1|G, 2GRB|1|D | quadruplex,structure | NULL |
| 82 | NR_1.5_29178.1 Exact match | 4E6B|1|E+4E6B|1|F (4E6B)
| 1.5 Å | 4 | (1) 4E6B|1|E+4E6B|1|F | A-form double helix,double helix,structure | NULL |
| 83 | NR_1.5_30683.1 Exact match | 3P4C|1|B (3P4C)
| 1.2 Å | 4 | (7) 3P4C|1|B, 3P4B|1|A, 3P4B|1|C, 3P4B|1|D, 3P4B|1|B, 3P4B|1|F, 3P4B|1|E | A-form double helix,double helix,structure | NULL |
| 84 | NR_1.5_80245.1 Exact match | 4E6B|1|A+4E6B|1|B (4E6B)
| 1.5 Å | 4 | (1) 4E6B|1|A+4E6B|1|B | A-form double helix,double helix,structure | NULL |
| 85 | NR_1.5_25105.1 Exact match synthetic construct | 5K8H|1|A (5K8H)
| 1.1 Å | 2 | (1) 5K8H|1|A | parallel helix,structure | NULL |
| 86 | NR_1.5_42650.1 Exact match | 4S2X|1|B (4S2X)
| 1.5 Å | 2 | (1) 4S2X|1|B | NULL | enzyme,hydrolase |
| 87 | NR_1.5_61331.2 Exact match Tobacco virtovirus 1 | 4OQ9|1|7 (4OQ9)
| 1.5 Å | 2 | (16) 4OQ9|1|7, 4OQ9|1|4, 4OQ9|1|8, 4OQ9|1|t, 4OQ9|1|y, 4OQ9|1|x, 4OQ9|1|6, 4OQ8|1|D, 4OQ9|1|w, 4OQ9|1|5, 4OQ9|1|u, 4OQ9|1|z, 4OQ9|1|2, 4OQ9|1|v, 4OQ9|1|3, 4OQ9|1|1 | NULL | structural,virus |