Representative Sets of RNA 3D Structures
Release 2.0, 2014-12-05
New id, no parents 65;
| # | Equivalence class | Representative | Resolution | Nts | Class members | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | NR_1.5_81620.1 New id, no parents Bacillus subtilis | 4FE5|1|B (4FE5)
| 1.3 Å | 65 | (4) 4FE5|1|B, 4FEN|1|B, 4FEJ|1|B, 2XNW|1|A | function,purine-compound riboswitch,riboswitch | NULL |
| 2 | NR_1.5_37085.1 New id, no parents | 1L2X|1|A (1L2X)
| 1.3 Å | 38 | (1) 1L2X|1|A | frameshifting element,function,translation regulating | NULL |
| 3 | NR_1.5_20132.1 New id, no parents | 4NLF|1|A (4NLF)
| 1.0 Å | 31 | (13) 4NLF|1|A, 480D|1|A, 3DW4|1|A, 1MSY|1|A, 3DW6|1|A, 3DVZ|1|A, 3S7C|1|A, 3S8U|1|A, 1Q9A|1|A, 483D|1|A, 3DW5|1|A, 4NMG|1|A, 3DW7|1|A | function,protein synthesis,ribosomal RNA | NULL |
| 4 | NR_1.5_86036.1 New id, no parents | 2A43|1|A (2A43)
| 1.3 Å | 26 | (1) 2A43|1|A | frameshifting element,function,translation regulating | NULL |
| 5 | NR_1.5_19982.1 New id, no parents Leishmania | 4K31|1|B (4K31)
| 1.4 Å | 22 | (1) 4K31|1|B | A-form double helix,double helix,function,protein synthesis,ribosomal RNA,structure | NULL |
| 6 | NR_1.5_07802.1 New id, no parents | 4LGT|1|F (4LGT)
| 1.3 Å | 20 | (2) 4LGT|1|F, 4LGT|1|E | function,protein synthesis,ribosomal RNA | enzyme,isomerase |
| 7 | NR_1.5_20819.1 New id, no parents | 3SJ2|1|A (3SJ2)
| 1.4 Å | 19 | (1) 3SJ2|1|A | NULL | NULL |
| 8 | NR_1.5_84048.1 New id, no parents | 1F27|1|A (1F27)
| 1.3 Å | 19 | (1) 1F27|1|A | aptamer,function | NULL |
| 9 | NR_1.5_16020.1 New id, no parents | 2Y8Y|1|B (2Y8Y)
| 1.4 Å | 18 | (1) 2Y8Y|1|B | NULL | CRISPR-Cas,enzyme,hydrolase,nuclease,regulatory |
| 10 | NR_1.5_50098.1 New id, no parents | 3ND3|1|A (3ND3)
| 1.4 Å | 16 | (1) 3ND3|1|A | double helix,structure | NULL |
| 11 | NR_1.5_22849.1 New id, no parents | 3CZW|1|X (3CZW)
| 1.4 Å | 15 | (1) 3CZW|1|X | catalytic,function,hammerhead ribozyme | NULL |
| 12 | NR_1.5_50588.1 New id, no parents | 397D|1|A (397D)
| 1.3 Å | 15 | (1) 397D|1|A | A-form double helix,double helix,structure | NULL |
| 13 | NR_1.5_59469.1 New id, no parents | 3R1D|1|E (3R1D)
| 1.5 Å | 15 | (1) 3R1D|1|E | A-form double helix,double helix,structure | NULL |
| 14 | NR_1.5_82783.1 New id, no parents | 4O41|1|B (4O41)
| 1.2 Å | 13 | (2) 4O41|1|B, 4O41|1|C | A-form double helix,double helix,structure | NULL |
| 15 | NR_1.5_88351.1 New id, no parents | 3R1D|1|C (3R1D)
| 1.5 Å | 13 | (2) 3R1D|1|C, 3R1D|1|A | A-form double helix,double helix,structure | NULL |
| 16 | NR_1.5_34914.1 New id, no parents | 2R22|1|A (2R22)
| 1.4 Å | 12 | (3) 2R22|1|A, 2R20|1|A, 2R1S|1|A | A-form double helix,double helix,structure | NULL |
| 17 | NR_1.5_41683.1 New id, no parents Escherichia coli | 354D|1|A (354D)
| 1.5 Å | 12 | (1) 354D|1|A | double helix,structure | NULL |
| 18 | NR_1.5_47342.1 New id, no parents | 2Q1R|1|A (2Q1R)
| 1.1 Å | 12 | (1) 2Q1R|1|A | A-form double helix,double helix,structure | NULL |
| 19 | NR_1.5_14790.1 New id, no parents | 1QCU|1|A (1QCU)
| 1.2 Å | 11 | (1) 1QCU|1|A | A-form double helix,double helix,structure | NULL |
| 20 | NR_1.5_23777.1 New id, no parents | 4JRD|1|B (4JRD)
| 1.0 Å | 11 | (2) 4JRD|1|B, 4JRD|1|A | parallel helix,structure | NULL |
| 21 | NR_1.5_76006.1 New id, no parents | 2ASB|1|B (2ASB)
| 1.5 Å | 11 | (1) 2ASB|1|B | function,protein synthesis,ribosomal RNA | RNA-binding transcription factor,regulatory,transcription |
| 22 | NR_1.5_88186.1 New id, no parents | 1QCU|1|C (1QCU)
| 1.2 Å | 11 | (1) 1QCU|1|C | A-form double helix,double helix,structure | NULL |
| 23 | NR_1.5_91811.1 New id, no parents | 2Q1O|1|C (2Q1O)
| 1.1 Å | 11 | (2) 2Q1O|1|C, 2Q1O|1|A | A-form double helix,double helix,structure | NULL |
| 24 | NR_1.5_26128.1 New id, no parents Tobacco virtovirus 1 | 4OQ9|1|d (4OQ9)
| 1.5 Å | 10 | (16) 4OQ9|1|d, 4OQ8|1|B, 4OQ9|1|P, 4OQ9|1|Q, 4OQ9|1|R, 4OQ9|1|S, 4OQ9|1|T, 4OQ9|1|U, 4OQ9|1|V, 4OQ9|1|W, 4OQ9|1|X, 4OQ9|1|Y, 4OQ9|1|Z, 4OQ9|1|a, 4OQ9|1|b, 4OQ9|1|c | NULL | structural,virus |
| 25 | NR_1.5_30099.1 New id, no parents Tobacco virtovirus 1 | 4OQ9|1|s (4OQ9)
| 1.5 Å | 10 | (10) 4OQ9|1|s, 4OQ8|1|C, 4OQ9|1|f, 4OQ9|1|j, 4OQ9|1|k, 4OQ9|1|l, 4OQ9|1|o, 4OQ9|1|p, 4OQ9|1|q, 4OQ9|1|r | NULL | structural,virus |
| 26 | NR_1.5_34195.1 New id, no parents | 4MSR|1|A (4MSR)
| 1.2 Å | 10 | (2) 4MSR|1|A, 4MS9|1|A | A-form double helix,double helix,structure | NULL |
| 27 | NR_1.5_37821.1 New id, no parents | 3NJ6|1|A (3NJ6)
| 1.0 Å | 10 | (1) 3NJ6|1|A | A-form double helix,double helix,structure | NULL |
| 28 | NR_1.5_74141.1 New id, no parents | 1PJO|1|A (1PJO)
| 1.1 Å | 10 | (3) 1PJO|1|A, 1PJG|1|A, 1G4Q|1|A | A-form double helix,double helix,structure | NULL |
| 29 | NR_1.5_93801.1 New id, no parents | 3OK4|1|Z (3OK4)
| 1.2 Å | 10 | (15) 3OK4|1|Z, 3OK4|1|2, 3OK4|1|4, 3OK4|1|B, 3OK4|1|D, 3OK4|1|F, 3OK4|1|H, 3OK4|1|J, 3OK4|1|L, 3OK4|1|N, 3OK4|1|P, 3OK4|1|R, 3OK4|1|T, 3OK4|1|V, 3OK4|1|X | A-form double helix,double helix,structure | NULL |
| 30 | NR_1.5_98011.1 New id, no parents | 3R1E|1|A (3R1E)
| 1.0 Å | 10 | (1) 3R1E|1|A | A-form double helix,double helix,structure | NULL |
| 31 | NR_1.5_00646.1 New id, no parents | 2G3S|1|I (2G3S)
| 1.5 Å | 8 | (5) 2G3S|1|I, 2G3S|1|A, 2G3S|1|C, 2G3S|1|E, 2G3S|1|G | A-form double helix,double helix,structure | NULL |
| 32 | NR_1.5_04430.1 New id, no parents | 3G9Y|1|C (3G9Y)
| 1.4 Å | 8 | (1) 3G9Y|1|C | NULL | post-transcriptional,regulatory,splicing |
| 33 | NR_1.5_04432.1 New id, no parents | 4MDX|1|C (4MDX)
| 1.5 Å | 8 | (1) 4MDX|1|C | NULL | enzyme,hydrolase,nuclease |
| 34 | NR_1.5_38156.1 New id, no parents | 2G91|1|A (2G91)
| 1.5 Å | 8 | (1) 2G91|1|A | A-form double helix,double helix,structure | NULL |
| 35 | NR_1.5_61028.1 New id, no parents | 3GLP|1|C (3GLP)
| 1.2 Å | 8 | (4) 3GLP|1|C, 3GLP|1|B, 3GLP|1|A, 3GLP|1|E | A-form double helix,double helix,structure | NULL |
| 36 | NR_1.5_74420.1 New id, no parents | 1J9H|1|C (1J9H)
| 1.4 Å | 8 | (2) 1J9H|1|C, 1J9H|1|A | NULL | NULL |
| 37 | NR_1.5_88664.1 New id, no parents | 259D|1|A (259D)
| 1.5 Å | 8 | (1) 259D|1|A | A-form double helix,double helix,structure | NULL |
| 38 | NR_1.5_97285.1 New id, no parents | 3PF4|1|R (3PF4)
| 1.4 Å | 8 | (1) 3PF4|1|R | NULL | regulatory,transcription |
| 39 | NR_1.5_02590.1 New id, no parents | 3GVN|1|A (3GVN)
| 1.2 Å | 7 | (1) 3GVN|1|A | A-form double helix,double helix,structure | NULL |
| 40 | NR_1.5_10751.1 New id, no parents synthetic construct | 4JAH|1|E (4JAH)
| 1.5 Å | 7 | (3) 4JAH|1|E, 4JAH|1|A, 4JAH|1|C | NULL | NULL |
| 41 | NR_1.5_34908.1 New id, no parents Homo sapiens | 2VUQ|1|A (2VUQ)
| 1.2 Å | 7 | (1) 2VUQ|1|A | A-form double helix,double helix,structure | NULL |
| 42 | NR_1.5_50145.1 New id, no parents | 466D|1|C (466D)
| 1.2 Å | 7 | (6) 466D|1|C, 434D|1|A, 464D|1|A, 466D|1|A, 434D|1|C, 464D|1|C | A-form double helix,double helix,structure | NULL |
| 43 | NR_1.5_64337.1 New id, no parents Mus musculus | 2XS2|1|B (2XS2)
| 1.4 Å | 7 | (1) 2XS2|1|B | NULL | regulatory,translation |
| 44 | NR_1.5_78848.1 New id, no parents | 1WPU|1|C (1WPU)
| 1.5 Å | 7 | (2) 1WPU|1|C, 1WPU|1|D | NULL | RNA-binding transcription factor,regulatory,transcription |
| 45 | NR_1.5_81643.1 New id, no parents Homo sapiens | 2V7R|1|A (2V7R)
| 1.2 Å | 7 | (1) 2V7R|1|A | A-form double helix,double helix,function,protein synthesis,structure,transfer RNA | NULL |
| 46 | NR_1.5_87121.1 New id, no parents | 4QM6|1|D (4QM6)
| 1.5 Å | 7 | (2) 4QM6|1|D, 4QM6|1|C | NULL | enzyme,kinase,transferase |
| 47 | NR_1.5_93803.1 New id, no parents | 435D|1|C (435D)
| 1.4 Å | 7 | (2) 435D|1|C, 435D|1|A | A-form double helix,double helix,structure | NULL |
| 48 | NR_1.5_98978.1 New id, no parents synthetic construct | 4U34|1|B (4U34)
| 1.4 Å | 7 | (1) 4U34|1|B | A-form double helix,double helix,structure | NULL |
| 49 | NR_1.5_06719.1 New id, no parents | 3P4C|1|A (3P4C)
| 1.2 Å | 6 | (1) 3P4C|1|A | A-form double helix,double helix,structure | NULL |
| 50 | NR_1.5_09561.1 New id, no parents | 1OSU|1|A (1OSU)
| 1.4 Å | 6 | (2) 1OSU|1|A, 3HGA|1|X | NULL | NULL |
| 51 | NR_1.5_35012.1 New id, no parents synthetic construct | 4ALP|1|E (4ALP)
| 1.5 Å | 6 | (1) 4ALP|1|E | NULL | gene silencing,regulatory |
| 52 | NR_1.5_43822.1 New id, no parents | 4RKV|1|A (4RKV)
| 0.9 Å | 6 | (13) 4RKV|1|A, 4RNE|1|A, 4RNE|1|F, 1J8G|1|A, 4RJ1|1|A, 4RNE|1|B, 1J8G|1|C, 4RNE|1|C, 1J8G|1|D, 4RNE|1|D, 4RNE|1|E, 4RNE|1|G, 4RNE|1|H | quadruplex,structure | NULL |
| 53 | NR_1.5_69595.1 New id, no parents | 1J8G|1|B (1J8G)
| 0.6 Å | 6 | (2) 1J8G|1|B, 4RKV|1|B | quadruplex,structure | NULL |
| 54 | NR_1.5_75211.1 New id, no parents | 3PEY|1|B (3PEY)
| 1.4 Å | 6 | (2) 3PEY|1|B, 3PEW|1|B | NULL | enzyme,helicase,hydrolase,post-transcriptional,regulatory,splicing |
| 55 | NR_1.5_87873.1 New id, no parents synthetic construct | 4RJ1|1|B (4RJ1)
| 0.9 Å | 6 | (1) 4RJ1|1|B | quadruplex,structure | NULL |
| 56 | NR_1.5_22496.1 New id, no parents | 1J6S|1|D (1J6S)
| 1.4 Å | 5 | (4) 1J6S|1|D, 1J6S|1|A, 1J6S|1|B, 1J6S|1|C | quadruplex,structure | NULL |
| 57 | NR_1.5_41627.1 New id, no parents Mus musculus | 2XS7|1|B (2XS7)
| 1.5 Å | 5 | (1) 2XS7|1|B | NULL | regulatory,translation |
| 58 | NR_1.5_58336.1 New id, no parents | 3JXQ|1|L (3JXQ)
| 1.5 Å | 5 | (6) 3JXQ|1|L, 3JXQ|1|B, 3JXR|1|A, 3JXQ|1|A, 3JXQ|1|K, 3JXR|1|K | A-form double helix,double helix,structure | NULL |
| 59 | NR_1.5_64318.1 New id, no parents | 1MDG|1|A (1MDG)
| 1.5 Å | 5 | (1) 1MDG|1|A | quadruplex,structure | NULL |
| 60 | NR_1.5_90693.1 New id, no parents | 1P79|1|A (1P79)
| 1.1 Å | 5 | (1) 1P79|1|A | parallel helix,structure | NULL |
| 61 | NR_1.5_08290.1 New id, no parents | 2GRB|1|F (2GRB)
| 1.4 Å | 4 | (8) 2GRB|1|F, 2GRB|1|A, 2GRB|1|C, 2GRB|1|B, 2GRB|1|E, 2GRB|1|H, 2GRB|1|G, 2GRB|1|D | quadruplex,structure | NULL |
| 62 | NR_1.5_08815.1 New id, no parents | 3P4C|1|B (3P4C)
| 1.2 Å | 4 | (7) 3P4C|1|B, 3P4B|1|A, 3P4B|1|B, 3P4B|1|C, 3P4B|1|D, 3P4B|1|E, 3P4B|1|F | A-form double helix,double helix,structure | NULL |
| 63 | NR_1.5_58043.1 New id, no parents | 4E6B|1|A (4E6B)
| 1.5 Å | 4 | (1) 4E6B|1|A | A-form double helix,double helix,structure | NULL |
| 64 | NR_1.5_69298.1 New id, no parents | 4E6B|1|E (4E6B)
| 1.5 Å | 4 | (1) 4E6B|1|E | A-form double helix,double helix,structure | NULL |
| 65 | NR_1.5_62614.1 New id, no parents Tobacco virtovirus 1 | 4OQ9|1|z (4OQ9)
| 1.5 Å | 2 | (16) 4OQ9|1|z, 4OQ9|1|1, 4OQ9|1|2, 4OQ9|1|3, 4OQ9|1|4, 4OQ9|1|5, 4OQ9|1|6, 4OQ9|1|7, 4OQ9|1|8, 4OQ8|1|D, 4OQ9|1|t, 4OQ9|1|u, 4OQ9|1|v, 4OQ9|1|w, 4OQ9|1|x, 4OQ9|1|y | NULL | structural,virus |