Equivalence class NR_all_99554.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1X8W|1|A (rep) | Group I catalytic intron | Tetrahymena ribozyme RNA | RF00028 | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-ray diffraction | 3.8 | 2004-11-09 | ||
| 2 | 1X8W|1|B | Group I catalytic intron | Tetrahymena ribozyme RNA | RF00028 | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-ray diffraction | 3.8 | 2004-11-09 | ||
| 3 | 1X8W|1|D | Group I catalytic intron | Tetrahymena ribozyme RNA | RF00028 | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-ray diffraction | 3.8 | 2004-11-09 | ||
| 4 | 1X8W|1|C | Group I catalytic intron | Tetrahymena ribozyme RNA | RF00028 | Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-ray diffraction | 3.8 | 2004-11-09 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2014-12-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_99554.1 | NR_20.0_04594.1 | 3.0 | (1) 1X8W|1|C | (3) 1X8W|1|A, 1X8W|1|D, 1X8W|1|B | (0) |
| NR_all_99554.1 | NR_20.0_99554.2 | 3.0 | (3) 1X8W|1|D, 1X8W|1|B, 1X8W|1|A | (1) 1X8W|1|C | (0) |
| NR_all_99554.1 | NR_4.0_04594.1 | 3.0 | (1) 1X8W|1|C | (3) 1X8W|1|B, 1X8W|1|A, 1X8W|1|D | (0) |
| NR_all_99554.1 | NR_4.0_99554.2 | 3.0 | (3) 1X8W|1|A, 1X8W|1|D, 1X8W|1|B | (1) 1X8W|1|C | (0) |
| NR_all_99554.1 | NR_all_04594.1 | 3.0 | (1) 1X8W|1|C | (3) 1X8W|1|A, 1X8W|1|D, 1X8W|1|B | (0) |
| NR_all_99554.1 | NR_all_99554.2 | 3.0 | (3) 1X8W|1|B, 1X8W|1|A, 1X8W|1|D | (1) 1X8W|1|C | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1X8W|1|A | Title: Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-RAY DIFFRACTION | 3.8 | 242 | ||
| 2 | 1X8W|1|B | Title: Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-RAY DIFFRACTION | 3.8 | 247 | ||
| 3 | 1X8W|1|D | Title: Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-RAY DIFFRACTION | 3.8 | 242 | ||
| 4 | 1X8W|1|C | Title: Structure of the Tetrahymena Ribozyme: Base Triple Sandwich and Metal Ion at the Active Site | X-RAY DIFFRACTION | 3.8 | 237 |
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