Equivalence class NR_all_97108.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1IL2|1|C (rep) | Transfer RNA | ASPARTYL TRANSFER RNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Crystal Structure of the E. coli Aspartyl-tRNA Synthetase:Yeast tRNAasp:aspartyl-Adenylate Complex | X-ray diffraction | 2.6 | 2001-09-28 |
| 2 | 1IL2|1|D | Transfer RNA | ASPARTYL TRANSFER RNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Crystal Structure of the E. coli Aspartyl-tRNA Synthetase:Yeast tRNAasp:aspartyl-Adenylate Complex | X-ray diffraction | 2.6 | 2001-09-28 |
| 3 | 2TRA|1|A | Transfer RNA | TRNAASP | Saccharomyces cerevisiae | Eukarya | RF00005 | RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS | X-ray diffraction | 3 | 1987-11-06 |
| 4 | 3TRA|1|A | Transfer RNA | TRNAASP | Saccharomyces cerevisiae | Eukarya | RF00005 | RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS | X-ray diffraction | 3 | 1987-11-06 |
| 5 | 1ASZ|1|S | Transfer RNA | T-RNA (75-MER) | RF00005 | THE ACTIVE SITE OF YEAST ASPARTYL-TRNA SYNTHETASE: STRUCTURAL AND FUNCTIONAL ASPECTS OF THE AMINOACYLATION REACTION | X-ray diffraction | 3 | 1995-05-08 | ||
| 6 | 1ASY|1|S | Transfer RNA | T-RNA (75-MER) | RF00005 | CLASS II AMINOACYL TRANSFER RNA SYNTHETASES: CRYSTAL STRUCTURE OF YEAST ASPARTYL-TRNA SYNTHETASE COMPLEXED WITH TRNA ASP | X-ray diffraction | 2.9 | 1995-05-08 | ||
| 7 | 1ASZ|1|R | Transfer RNA | T-RNA (75-MER) | RF00005 | THE ACTIVE SITE OF YEAST ASPARTYL-TRNA SYNTHETASE: STRUCTURAL AND FUNCTIONAL ASPECTS OF THE AMINOACYLATION REACTION | X-ray diffraction | 3 | 1995-05-08 | ||
| 8 | 1ASY|1|R | Transfer RNA | T-RNA (75-MER) | RF00005 | CLASS II AMINOACYL TRANSFER RNA SYNTHETASES: CRYSTAL STRUCTURE OF YEAST ASPARTYL-TRNA SYNTHETASE COMPLEXED WITH TRNA ASP | X-ray diffraction | 2.9 | 1995-05-08 | ||
| 9 | 1VTQ|1|A | Transfer RNA | T-RNA-ASP | synthetic construct | Synthetic | RF00005 | THREE-DIMENSIONAL STRUCTURE OF YEAST T-RNA-ASP. I. STRUCTURE DETERMINATION | X-ray diffraction | 3 | 2011-07-13 |
| 10 | 3J16|1|L | Transfer RNA | P-site tRNA | Saccharomyces cerevisiae | Eukarya | RF00005 | Models of ribosome-bound Dom34p and Rli1p and their ribosomal binding partners | Electron microscopy | 7.2 | 2012-02-22 |
| 11 | 4V6I|1|CB | Transfer RNA | P-SITE TRNA ASP, MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3') | Saccharomyces cerevisiae | Eukarya | RF00005 | Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome | Electron microscopy | 8.8 | 2014-07-09 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_97108.1 | NR_all_22929.1 | 8.0 | (3) 3TRA|1|A, 2TRA|1|A, 1VTQ|1|A | (8) 4V6I|1|CB, 3J16|1|L, 1IL2|1|D, 1IL2|1|C, 1ASZ|1|S, 1ASZ|1|R, 1ASY|1|S, 1ASY|1|R | (0) |
| NR_all_97108.1 | NR_all_40905.1 | 8.0 | (6) 1ASY|1|S, 1ASY|1|R, 1IL2|1|D, 1IL2|1|C, 1ASZ|1|S, 1ASZ|1|R | (5) 2TRA|1|A, 1VTQ|1|A, 4V6I|1|CB, 3TRA|1|A, 3J16|1|L | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4V6I|1|CB | Title: Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome | ELECTRON MICROSCOPY | 8.8 | 75 | ||
| 2 | 3J16|1|L | Title: Models of ribosome-bound Dom34p and Rli1p and their ribosomal binding partners | ELECTRON MICROSCOPY | 7.2 | 75 | ||
| 3 | 1VTQ|1|A | Title: THREE-DIMENSIONAL STRUCTURE OF YEAST T-RNA-ASP. I. STRUCTURE DETERMINATION | X-RAY DIFFRACTION | 3 | 67 | ||
| 4 | 3TRA|1|A | Title: RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS | X-RAY DIFFRACTION | 3 | 64 | ||
| 5 | 2TRA|1|A | Title: RESTRAINED REFINEMENT OF TWO CRYSTALLINE FORMS OF YEAST ASPARTIC ACID AND PHENYLALANINE TRANSFER RNA CRYSTALS | X-RAY DIFFRACTION | 3 | 70 | ||
| 6 | 1IL2|1|D | Title: Crystal Structure of the E. coli Aspartyl-tRNA Synthetase:Yeast tRNAasp:aspartyl-Adenylate Complex | X-RAY DIFFRACTION | 2.6 | 62 | ||
| 7 | 1ASY|1|S | Title: CLASS II AMINOACYL TRANSFER RNA SYNTHETASES: CRYSTAL STRUCTURE OF YEAST ASPARTYL-TRNA SYNTHETASE COMPLEXED WITH TRNA ASP | X-RAY DIFFRACTION | 2.9 | 67 | ||
| 8 | 1ASZ|1|S | Title: THE ACTIVE SITE OF YEAST ASPARTYL-TRNA SYNTHETASE: STRUCTURAL AND FUNCTIONAL ASPECTS OF THE AMINOACYLATION REACTION | X-RAY DIFFRACTION | 3 | 67 | ||
| 9 | 1ASZ|1|R | Title: THE ACTIVE SITE OF YEAST ASPARTYL-TRNA SYNTHETASE: STRUCTURAL AND FUNCTIONAL ASPECTS OF THE AMINOACYLATION REACTION | X-RAY DIFFRACTION | 3 | 67 | ||
| 10 | 1ASY|1|R | Title: CLASS II AMINOACYL TRANSFER RNA SYNTHETASES: CRYSTAL STRUCTURE OF YEAST ASPARTYL-TRNA SYNTHETASE COMPLEXED WITH TRNA ASP | X-RAY DIFFRACTION | 2.9 | 67 | ||
| 11 | 1IL2|1|C | Title: Crystal Structure of the E. coli Aspartyl-tRNA Synthetase:Yeast tRNAasp:aspartyl-Adenylate Complex | X-RAY DIFFRACTION | 2.6 | 67 |
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