Equivalence class NR_all_72282.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5IPL|1|3 (rep) | nascent RNA 4-mer | synthetic construct | Synthetic | SigmaS-transcription initiation complex with 4-nt nascent RNA | X-ray diffraction | 3.6 | 2016-03-30 | ||
| 2 | 5IPM|1|3 | nascent RNA 4-mer | synthetic construct | Synthetic | SigmaS-transcription initiation complex with 4-nt nascent RNA | X-ray diffraction | 4.2 | 2016-03-30 | ||
| 3 | 5IPN|1|3 | Nascent RNA 4-mer | synthetic construct | Synthetic | SigmaS-transcription initiation complex with 4-nt nascent RNA | X-ray diffraction | 4.61 | 2016-03-30 | ||
| 4 | 4YLO|1|3 | RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3') | synthetic construct | Synthetic | E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA | X-ray diffraction | 6 | 2015-04-22 | ||
| 5 | 4YLN|1|3 | RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3') | synthetic construct | Synthetic | E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA | X-ray diffraction | 5.5 | 2015-04-22 | ||
| 6 | 4YLN|1|6 | RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3') | synthetic construct | Synthetic | E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA | X-ray diffraction | 5.5 | 2015-04-22 | ||
| 7 | 4YLO|1|6 | RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3') | synthetic construct | Synthetic | E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA | X-ray diffraction | 6 | 2015-04-22 | ||
| 8 | 4YLO|1|9 | RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3') | synthetic construct | Synthetic | E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA | X-ray diffraction | 6 | 2015-04-22 | ||
| 9 | 4YLN|1|9 | RNA (5'-D(*(GTP))-R(P*AP*GP*U)-3') | synthetic construct | Synthetic | E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA | X-ray diffraction | 5.5 | 2015-04-22 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5IPM|1|3 | Title: SigmaS-transcription initiation complex with 4-nt nascent RNA | X-RAY DIFFRACTION | 4.2 | 3 | ||
| 2 | 5IPN|1|3 | Title: SigmaS-transcription initiation complex with 4-nt nascent RNA | X-RAY DIFFRACTION | 4.61 | 3 | ||
| 3 | 5IPL|1|3 | Title: SigmaS-transcription initiation complex with 4-nt nascent RNA | X-RAY DIFFRACTION | 3.6 | 3 | ||
| 4 | 4YLN|1|6 | Title: E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA | X-RAY DIFFRACTION | 5.5 | 3 | ||
| 5 | 4YLN|1|9 | Title: E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA | X-RAY DIFFRACTION | 5.5 | 3 | ||
| 6 | 4YLO|1|6 | Title: E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA | X-RAY DIFFRACTION | 6 | 3 | ||
| 7 | 4YLN|1|3 | Title: E. coli Transcription Initiation Complex - 17-bp spacer and 4-nt RNA | X-RAY DIFFRACTION | 5.5 | 3 | ||
| 8 | 4YLO|1|3 | Title: E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA | X-RAY DIFFRACTION | 6 | 3 | ||
| 9 | 4YLO|1|9 | Title: E. coli Transcription Initiation Complex - 16-bp spacer and 4-nt RNA | X-RAY DIFFRACTION | 6 | 3 |
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