Equivalence class NR_all_67275.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4LCK|1|E (rep) | Transfer RNA | tRNA-Gly | Oceanobacillus iheyensis | Bacteria | RF00005 | Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA | X-ray diffraction | 3.2 | 2013-07-31 |
| 2 | 4TZV|1|B | Transfer RNA | engineered tRNA | Bacillus subtilis | Bacteria | RF00005 | Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate post crystallization | X-ray diffraction | 5.03 | 2014-09-10 |
| 3 | 4TZZ|1|H | Transfer RNA | engineered tRNAGly | Bacillus subtilis | Bacteria | RF00005 | Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization | X-ray diffraction | 3.64 | 2014-09-10 |
| 4 | 4TZZ|1|K | Transfer RNA | engineered tRNAGly | Bacillus subtilis | Bacteria | RF00005 | Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization | X-ray diffraction | 3.64 | 2014-09-10 |
| 5 | 4TZZ|1|B | Transfer RNA | engineered tRNAGly | Bacillus subtilis | Bacteria | RF00005 | Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization | X-ray diffraction | 3.64 | 2014-09-10 |
| 6 | 4LCK|1|B | Transfer RNA | tRNA-Gly | Oceanobacillus iheyensis | Bacteria | RF00005 | Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA | X-ray diffraction | 3.2 | 2013-07-31 |
| 7 | 4TZZ|1|E | Transfer RNA | engineered tRNAGly | Bacillus subtilis | Bacteria | RF00005 | Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization | X-ray diffraction | 3.64 | 2014-09-10 |
| 8 | 4TZP|1|E | Transfer RNA | engineered tRNA | Bacillus subtilis | Bacteria | RF00005 | As Grown, Untreated Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its cognate tRNAGly, and B. subtilis YbxF protein | X-ray diffraction | 8.5 | 2014-09-10 |
| 9 | 4TZW|1|B | Transfer RNA | engineered tRNA | Bacillus subtilis | Bacteria | RF00005 | Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and replacing Mg2+ with Sr2+ post crystallization | X-ray diffraction | 4.67 | 2014-09-10 |
| 10 | 4TZP|1|B | Transfer RNA | engineered tRNA | Bacillus subtilis | Bacteria | RF00005 | As Grown, Untreated Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its cognate tRNAGly, and B. subtilis YbxF protein | X-ray diffraction | 8.5 | 2014-09-10 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4TZP|1|B | Title: As Grown, Untreated Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its cognate tRNAGly, and B. subtilis YbxF protein | X-RAY DIFFRACTION | 8.5 | 70 | ||
| 2 | 4TZP|1|E | Title: As Grown, Untreated Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its cognate tRNAGly, and B. subtilis YbxF protein | X-RAY DIFFRACTION | 8.5 | 75 | ||
| 3 | 4LCK|1|E | Title: Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA | X-RAY DIFFRACTION | 3.2 | 75 | ||
| 4 | 4TZV|1|B | Title: Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate post crystallization | X-RAY DIFFRACTION | 5.03 | 75 | ||
| 5 | 4TZW|1|B | Title: Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and replacing Mg2+ with Sr2+ post crystallization | X-RAY DIFFRACTION | 4.67 | 75 | ||
| 6 | 4LCK|1|B | Title: Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA | X-RAY DIFFRACTION | 3.2 | 75 | ||
| 7 | 4TZZ|1|E | Title: Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization | X-RAY DIFFRACTION | 3.64 | 75 | ||
| 8 | 4TZZ|1|B | Title: Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization | X-RAY DIFFRACTION | 3.64 | 75 | ||
| 9 | 4TZZ|1|K | Title: Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization | X-RAY DIFFRACTION | 3.64 | 75 | ||
| 10 | 4TZZ|1|H | Title: Co-crystals of the Ternary Complex Containing a T-box Stem I RNA, its Cognate tRNAGly, and B. subtilis YbxF protein, treated by removing lithium sulfate and increasing PEG3350 concentration from 20% to 45% post crystallization | X-RAY DIFFRACTION | 3.64 | 75 |
Coloring options: