Equivalence class NR_all_65483.1 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 4WF9|1|Y (rep) | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-ray diffraction | 3.43 | 2015-10-21 |
2 | 4WFA|1|Y | 5S ribosomal RNA | 5S rRNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-ray diffraction | 3.39 | 2015-10-21 |
3 | 4WCE|1|Y | 5S ribosomal RNA | 5S rRNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus | X-ray diffraction | 3.53 | 2015-10-21 |
4 | 4WFB|1|Y | 5S ribosomal RNA | 5S rRNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-ray diffraction | 3.43 | 2015-10-21 |
5 | 5NRG|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-ray diffraction | 3.44 | 2017-08-09 |
6 | 5HKV|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin | X-ray diffraction | 3.66 | 2017-05-03 |
7 | 5HL7|1|Y | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin | X-ray diffraction | 3.55 | 2016-12-21 |
8 | 5NGM|1|AB | 5S ribosomal RNA | 5S Ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | Electron microscopy | 2.9 | 2017-10-04 |
9 | 5T7V|1|C | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | Electron microscopy | 3.6 | 2017-05-31 |
10 | 5ND8|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Hibernating ribosome from Staphylococcus aureus (Unrotated state) | Electron microscopy | 3.7 | 2017-06-28 |
11 | 5ND9|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | Hibernating ribosome from Staphylococcus aureus (Rotated state) | Electron microscopy | 3.7 | 2017-06-28 |
12 | 5LI0|1|B | 5S ribosomal RNA | 5S ribosomal RNA | Staphylococcus aureus | Bacteria | RF00001 | 70S ribosome from Staphylococcus aureus | Electron microscopy | 3.8 | 2016-12-28 |
13 | 5TCU|1|C | 5S ribosomal RNA | 5S rRNA CHAIN | Staphylococcus aureus | Bacteria | RF00001 | Methicillin sensitive Staphylococcus aureus 70S ribosome | Electron microscopy | 3.9 | 2017-05-24 |
14 | 5NG8|1|BB | 5S ribosomal RNA | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2017-10-04 | ||||
15 | 5NG8|1|AB | 5S ribosomal RNA | The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | Electron microscopy | 6.76 | 2017-10-04 |
Release history
Release | 9.11 |
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Date | 2018-01-28 |
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
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Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|---|---|---|---|---|
NR_all_65483.1 | NR_all_65483.2 | 9.12 | (15) 5HL7|1|Y, 5T7V|1|C, 5HKV|1|Y, 5NRG|1|Y, 4WFB|1|Y, 5NGM|1|AB, 4WFA|1|Y, 5NG8|1|BB, 4WF9|1|Y, 5NG8|1|AB, 4WCE|1|Y, 5ND9|1|B, 5ND8|1|B, 5LI0|1|B, 5TCU|1|C | (0) | (2) 6FXC|1|BB, 6FXC|1|AB |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
---|---|---|---|---|---|---|---|
1 | 5T7V|1|C | Title: Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3) | ELECTRON MICROSCOPY | 3.6 | 114 | ||
2 | 5TCU|1|C | Title: Methicillin sensitive Staphylococcus aureus 70S ribosome | ELECTRON MICROSCOPY | 3.9 | 114 | ||
3 | 5ND8|1|B | Title: Hibernating ribosome from Staphylococcus aureus (Unrotated state) | ELECTRON MICROSCOPY | 3.7 | 114 | ||
4 | 5ND9|1|B | Title: Hibernating ribosome from Staphylococcus aureus (Rotated state) | ELECTRON MICROSCOPY | 3.7 | 114 | ||
5 | 5LI0|1|B | Title: 70S ribosome from Staphylococcus aureus | ELECTRON MICROSCOPY | 3.8 | 114 | ||
6 | 4WFB|1|Y | Title: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with BC-3205 | X-RAY DIFFRACTION | 3.43 | 114 | ||
7 | 4WF9|1|Y | Title: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with telithromycin | X-RAY DIFFRACTION | 3.43 | 114 | ||
8 | 4WFA|1|Y | Title: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with linezolid | X-RAY DIFFRACTION | 3.39 | 114 | ||
9 | 4WCE|1|Y | Title: The crystal structure of the large ribosomal subunit of Staphylococcus aureus | X-RAY DIFFRACTION | 3.53 | 114 | ||
10 | 5NRG|1|Y | Title: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02 | X-RAY DIFFRACTION | 3.44 | 114 | ||
11 | 5HKV|1|Y | Title: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lincomycin | X-RAY DIFFRACTION | 3.66 | 114 | ||
12 | 5HL7|1|Y | Title: The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with lefamulin | X-RAY DIFFRACTION | 3.55 | 114 | ||
13 | 5NGM|1|AB | Title: 2.9S structure of the 70S ribosome composing the S. aureus 100S complex | ELECTRON MICROSCOPY | 2.9 | 115 | ||
14 | 5NG8|1|BB | Title: The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 115 | ||
15 | 5NG8|1|AB | Title: The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus | ELECTRON MICROSCOPY | 6.76 | 115 |
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