Equivalence class NR_all_60849.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4V6E|1|CX (rep) | P-site tRNA ASL fragment, messenger RNA | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.71 | 2014-07-09 | ||||
| 2 | 1KKA|1|A | anticodon stem-loop of tRNA(PHE) | Solution Structure of the Unmodified Anticodon Stem-loop from E. coli tRNA(Phe) | Solution NMR | 2002-07-17 | |||||
| 3 | 1J4Y|1|A | anticodon stem-loop of tRNA(Phe) | Solution Structure of the Unmodified Anticodon Stem-loop from E. coli tRNA(Phe) | Solution NMR | 2002-07-17 | |||||
| 4 | 4V6E|1|AX | P-site tRNA ASL fragment, messenger RNA | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.71 | 2014-07-09 | ||||
| 5 | 4V6E|1|CV | P-site tRNA ASL fragment, messenger RNA | Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-ray diffraction | 3.71 | 2014-07-09 | ||||
| 6 | 2AWQ|3|A | 5'-R(*GP*GP*GP*GP*AP*(PSU)P*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP*C)-3' | Solution Structure of pseudouridine-32 modified anticodon stem-loop of E. coli tRNAPhe | Solution NMR | 2006-01-17 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_60849.1 | NR_all_37730.1 | 3.0 | (1) 1KKA|1|A | (5) 4V6E|1|CX, 4V6E|1|CV, 4V6E|1|AX, 2AWQ|3|A, 1J4Y|1|A | (0) |
| NR_all_60849.1 | NR_all_46889.1 | 3.0 | (1) 1J4Y|1|A | (5) 4V6E|1|CX, 4V6E|1|CV, 4V6E|1|AX, 2AWQ|3|A, 1KKA|1|A | (0) |
| NR_all_60849.1 | NR_all_53995.1 | 3.0 | (3) 4V6E|1|CX, 4V6E|1|CV, 4V6E|1|AX | (3) 2AWQ|3|A, 1KKA|1|A, 1J4Y|1|A | (0) |
| NR_all_60849.1 | NR_all_75629.1 | 3.0 | (1) 2AWQ|3|A | (5) 4V6E|1|CX, 4V6E|1|CV, 4V6E|1|AX, 1KKA|1|A, 1J4Y|1|A | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_60849.1 | NR_20.0_24285.1 | 5.0 | (3) 4V6E|1|CX, 4V6E|1|AX, 4V6E|1|CV | (3) 1KKA|1|A, 1J4Y|1|A, 2AWQ|3|A | (0) |
| NR_all_60849.1 | NR_4.0_24285.1 | 5.0 | (3) 4V6E|1|CX, 4V6E|1|AX, 4V6E|1|CV | (3) 1KKA|1|A, 1J4Y|1|A, 2AWQ|3|A | (0) |
| NR_all_60849.1 | NR_all_11109.1 | 5.0 | (1) 2AWQ|3|A | (5) 1J4Y|1|A, 4V6E|1|AX, 4V6E|1|CX, 1KKA|1|A, 4V6E|1|CV | (0) |
| NR_all_60849.1 | NR_all_24285.1 | 5.0 | (3) 4V6E|1|AX, 4V6E|1|CV, 4V6E|1|CX | (3) 1J4Y|1|A, 2AWQ|3|A, 1KKA|1|A | (0) |
| NR_all_60849.1 | NR_all_82619.1 | 5.0 | (1) 1J4Y|1|A | (5) 1KKA|1|A, 4V6E|1|AX, 4V6E|1|CX, 2AWQ|3|A, 4V6E|1|CV | (0) |
| NR_all_60849.1 | NR_all_87798.1 | 5.0 | (1) 1KKA|1|A | (5) 4V6E|1|AX, 4V6E|1|CX, 2AWQ|3|A, 4V6E|1|CV, 1J4Y|1|A | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4V6E|1|CX | Title: Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-RAY DIFFRACTION | 3.71 | 17 | ||
| 2 | 4V6E|1|AX | Title: Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-RAY DIFFRACTION | 3.71 | 17 | ||
| 3 | 4V6E|1|CV | Title: Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting | X-RAY DIFFRACTION | 3.71 | 17 | ||
| 4 | 2AWQ|3|A | Title: Solution Structure of pseudouridine-32 modified anticodon stem-loop of E. coli tRNAPhe | SOLUTION NMR | 16 | |||
| 5 | 1J4Y|1|A | Title: Solution Structure of the Unmodified Anticodon Stem-loop from E. coli tRNA(Phe) | SOLUTION NMR | 17 | |||
| 6 | 1KKA|1|A | Title: Solution Structure of the Unmodified Anticodon Stem-loop from E. coli tRNA(Phe) | SOLUTION NMR | 17 |
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