Equivalence class NR_all_60727.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3NMU|1|D+ 3NMU|1|I (rep) | RNA (34-MER), RNA (5'-R(*GP*AP*GP*CP*UP*UP*CP*AP*AP*CP*GP*GP*C)-3') | Pyrococcus furiosus | Archaea + Synthetic | Crystal Structure of substrate-bound halfmer box C/D RNP | X-ray diffraction | 2.73 | 2011-05-25 | ||
| 2 | 3NMU|1|E+ 3NMU|1|K | RNA (34-MER), RNA (5'-R(*GP*AP*GP*CP*UP*UP*CP*AP*AP*CP*GP*GP*C)-3') | Pyrococcus furiosus | Archaea + Synthetic | Crystal Structure of substrate-bound halfmer box C/D RNP | X-ray diffraction | 2.73 | 2011-05-25 | ||
| 3 | 3NVK|1|K+ 3NVK|1|G | RNA (5'-R(*GP*CP*CP*GP*UP*UP*GP*AP*AP*GP*CP*UP*CP*UP*GP*AP*CP*CP*GP*AP*AP*AP*GP*GP*CP*GP*UP*GP*AP*UP*GP*AP*GP*C)-3'), RNA (5'-R(*GP*AP*GP*CP*UP*UP*CP*AP*AP*CP*GP*GP*C)-3') | Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle | X-ray diffraction | 3.21 | 2011-07-20 | ||||
| 4 | 3NVK|1|L+ 3NVK|1|S | RNA (5'-R(*GP*CP*CP*GP*UP*UP*GP*AP*AP*GP*CP*UP*CP*UP*GP*AP*CP*CP*GP*AP*AP*AP*GP*GP*CP*GP*UP*GP*AP*UP*GP*AP*GP*C)-3'), RNA (5'-R(*GP*AP*GP*CP*UP*UP*CP*AP*AP*CP*GP*GP*C)-3') | Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle | X-ray diffraction | 3.21 | 2011-07-20 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_60727.1 | NR_all_66650.1 | 4.0 | (2) 3NMU|1|E+3NMU|1|K, 3NMU|1|D+3NMU|1|I | (2) 3NVK|1|L+3NVK|1|S, 3NVK|1|K+3NVK|1|G | (0) |
| NR_all_60727.1 | NR_all_83817.1 | 4.0 | (2) 3NVK|1|L+3NVK|1|S, 3NVK|1|K+3NVK|1|G | (2) 3NMU|1|E+3NMU|1|K, 3NMU|1|D+3NMU|1|I | (0) |
Children
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3NVK|1|L+3NVK|1|S | Title: Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle | X-RAY DIFFRACTION | 3.21 | 24 | ||
| 2 | 3NMU|1|E+3NMU|1|K | Title: Crystal Structure of substrate-bound halfmer box C/D RNP | X-RAY DIFFRACTION | 2.73 | 34 | ||
| 3 | 3NMU|1|D+3NMU|1|I | Title: Crystal Structure of substrate-bound halfmer box C/D RNP | X-RAY DIFFRACTION | 2.73 | 34 | ||
| 4 | 3NVK|1|K+3NVK|1|G | Title: Structural basis for substrate placement by an archaeal box C/D ribonucleoprotein particle | X-RAY DIFFRACTION | 3.21 | 24 |
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