Equivalence class NR_all_58976.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2DD3|1|A+ 2DD3|1|B (rep) | 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3', 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3' | An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: II. The minor conformation with A6/A5/A16 stack | Solution NMR | 2006-06-13 | |||||
| 2 | 2DD2|1|A+ 2DD2|1|B | 5'-R(*GP*GP*UP*GP*AP*AP*GP*GP*CP*U)-3', 5'-R(*GP*CP*CP*GP*AP*AP*GP*CP*CP*(P5P))-3' | An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: I. The major conformation with A6/A15/A16 stack | Solution NMR | 2006-06-13 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_58976.1 | NR_all_55587.1 | 5.0 | (1) 2DD2|1|A+2DD2|1|B | (1) 2DD3|1|A+2DD3|1|B | (0) |
| NR_all_58976.1 | NR_all_70485.1 | 5.0 | (1) 2DD3|1|A+2DD3|1|B | (1) 2DD2|1|A+2DD2|1|B | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2DD3|1|A+2DD3|1|B | Title: An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: II. The minor conformation with A6/A5/A16 stack | SOLUTION NMR | 10 | |||
| 2 | 2DD2|1|A+2DD2|1|B | Title: An alternating sheared AA pair in 5'GGUGAAGGCU/3'PCCGAAGCCG: I. The major conformation with A6/A15/A16 stack | SOLUTION NMR | 10 |
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