Equivalence class NR_all_53031.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5JJU|1|C (rep) | RNA (5'-R(P*AP*A)-3') | synthetic construct | Synthetic | Crystal structure of Rv2837c complexed with 5'-pApA and 5'-AMP | X-ray diffraction | 2.31 | 2016-05-04 | ||
| 2 | 5CEU|1|C | RNA (5'-R(P*AP*A)-3') | Crystal structure of Rv2837c complexed with 5'-pApA | X-ray diffraction | 2.36 | 2015-12-23 | ||||
| 3 | 5CEU|1|D | RNA (5'-R(P*AP*A)-3') | Crystal structure of Rv2837c complexed with 5'-pApA | X-ray diffraction | 2.36 | 2015-12-23 | ||||
| 4 | 4EJT|1|G | 5'-R(*AP*A)-3' | Staphylococcus epidermidis TcaR in complex with RNA | X-ray diffraction | 3 | 2013-06-05 | ||||
| 5 | 3J0L|1|w | mRNA fragment | Oryctolagus cuniculus | Eukarya | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1 | Electron microscopy | 9.8 | 2011-11-16 | ||
| 6 | 3J0O|1|w | mRNA fragment | Oryctolagus cuniculus | Eukarya | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2 | Electron microscopy | 9 | 2011-11-16 | ||
| 7 | 3J0Q|1|w | mRNA fragment | Oryctolagus cuniculus | Eukarya | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2 | Electron microscopy | 10.6 | 2011-11-16 | ||
| 8 | 3J0P|1|w | mRNA fragment | Oryctolagus cuniculus | Eukarya | Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1 | Electron microscopy | 10.6 | 2011-11-16 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_53031.1 | NR_all_23091.1 | 3.0 | (4) 3J0Q|1|w, 3J0P|1|w, 3J0O|1|w, 3J0L|1|w | (4) 5JJU|1|C, 5CEU|1|D, 5CEU|1|C, 4EJT|1|G | (0) |
| NR_all_53031.1 | NR_all_32841.1 | 3.0 | (1) 4EJT|1|G | (7) 5JJU|1|C, 5CEU|1|D, 5CEU|1|C, 3J0Q|1|w, 3J0P|1|w, 3J0O|1|w, 3J0L|1|w | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3J0O|1|w | Title: Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9A cryo-EM map: classic PRE state 2 | ELECTRON MICROSCOPY | 9 | 2 | ||
| 2 | 3J0L|1|w | Title: Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 9.8A cryo-EM map: classic PRE state 1 | ELECTRON MICROSCOPY | 9.8 | 2 | ||
| 3 | 3J0P|1|w | Title: Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 1 | ELECTRON MICROSCOPY | 10.6 | 2 | ||
| 4 | 3J0Q|1|w | Title: Core of mammalian 80S pre-ribosome in complex with tRNAs fitted to a 10.6A cryo-em map: rotated PRE state 2 | ELECTRON MICROSCOPY | 10.6 | 2 | ||
| 5 | 4EJT|1|G | Title: Staphylococcus epidermidis TcaR in complex with RNA | X-RAY DIFFRACTION | 3 | 2 | ||
| 6 | 5CEU|1|C | Title: Crystal structure of Rv2837c complexed with 5'-pApA | X-RAY DIFFRACTION | 2.36 | 2 | ||
| 7 | 5CEU|1|D | Title: Crystal structure of Rv2837c complexed with 5'-pApA | X-RAY DIFFRACTION | 2.36 | 2 | ||
| 8 | 5JJU|1|C | Title: Crystal structure of Rv2837c complexed with 5'-pApA and 5'-AMP | X-RAY DIFFRACTION | 2.31 | 2 |
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