Equivalence class NR_all_48374.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1C04|1|F (rep) | Large subunit ribosomal RNA fragment | 23S RRNA FRAGMENT | Haloarcula marismortui | Archaea | IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI | X-ray diffraction | 5 | 1999-08-31 | |
| 2 | 430D|1|A | Large subunit ribosomal RNA fragment | SARCIN/RICIN LOOP FROM RAT 28S R-RNA | Rattus norvegicus | Eukarya | STRUCTURE OF SARCIN/RICIN LOOP FROM RAT 28S RRNA | X-ray diffraction | 2.1 | 1998-10-07 | |
| 3 | 1SCL|4|A | RNA SARCIN-RICIN LOOP | Rattus norvegicus | Eukarya | THE SARCIN-RICIN LOOP, A MODULAR RNA | Solution NMR | 1995-01-26 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_48374.1 | NR_2.5_48374.2 | 5.0 | (1) 430D|1|A | (2) 1C04|1|F, 1SCL|4|A | (0) |
| NR_all_48374.1 | NR_20.0_48374.2 | 5.0 | (2) 1C04|1|F, 430D|1|A | (1) 1SCL|4|A | (0) |
| NR_all_48374.1 | NR_3.0_48374.2 | 5.0 | (1) 430D|1|A | (2) 1SCL|4|A, 1C04|1|F | (0) |
| NR_all_48374.1 | NR_3.5_48374.2 | 5.0 | (1) 430D|1|A | (2) 1SCL|4|A, 1C04|1|F | (0) |
| NR_all_48374.1 | NR_4.0_48374.2 | 5.0 | (1) 430D|1|A | (2) 1SCL|4|A, 1C04|1|F | (0) |
| NR_all_48374.1 | NR_all_48374.2 | 5.0 | (2) 430D|1|A, 1C04|1|F | (1) 1SCL|4|A | (0) |
| NR_all_48374.1 | NR_all_76909.1 | 5.0 | (1) 1SCL|4|A | (2) 1C04|1|F, 430D|1|A | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 430D|1|A | Title: STRUCTURE OF SARCIN/RICIN LOOP FROM RAT 28S RRNA | X-RAY DIFFRACTION | 2.1 | 28 | ||
| 2 | 1C04|1|F | Title: IDENTIFICATION OF KNOWN PROTEIN AND RNA STRUCTURES IN A 5 A MAP OF THE LARGE RIBOSOMAL SUBUNIT FROM HALOARCULA MARISMORTUI | X-RAY DIFFRACTION | 5 | 29 | ||
| 3 | 1SCL|4|A | Title: THE SARCIN-RICIN LOOP, A MODULAR RNA | SOLUTION NMR | 29 |
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