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Equivalence class NR_all_47503.3 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15VYC|1|i2 (rep)Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-ray diffraction62017-07-19
25VYC|1|i3Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-ray diffraction62017-07-19
35VYC|1|i5Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-ray diffraction62017-07-19
45VYC|1|i1Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-ray diffraction62017-07-19
55VYC|1|i6Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-ray diffraction62017-07-19
65VYC|1|i4Small subunit ribosomal RNAHuman 18S ribosomal RNAHomo sapiensEukaryaRF01960Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-ray diffraction62017-07-19
76EK0|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaHigh-resolution cryo-EM structure of the human 80S ribosomeElectron microscopy2.92018-01-24
86G18|1|2Small subunit ribosomal RNApre-18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State CElectron microscopy3.62018-06-06
96G5I|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State RElectron microscopy3.52018-06-06
104UG0|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960STRUCTURE OF THE HUMAN 80S RIBOSOMEElectron microscopy3.62015-06-10
116G5H|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - MatureElectron microscopy3.62018-06-06
125AJ0|1|B1Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo electron microscopy of actively translating human polysomes (POST state).Electron microscopy3.52015-05-20
135A2Q|1|2Small subunit ribosomal RNA18S RRNAHomo sapiensEukaryaRF01960Structure of the HCV IRES bound to the human ribosomeElectron microscopy3.92015-07-15
146G51|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State DElectron microscopy4.12018-06-06
156G4S|1|2Small subunit ribosomal RNApre-18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State BElectron microscopy42018-06-06
165OA3|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human 40S-eIF2D-re-initiation complexElectron microscopy4.22017-08-09
175LKS|1|S2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure-function insights reveal the human ribosome as a cancer target for antibioticsElectron microscopy3.62017-04-26
186G53|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State EElectron microscopy4.52018-06-06
196G4W|1|2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Cryo-EM structure of a late human pre-40S ribosomal subunit - State AElectron microscopy4.52018-06-06
204V6X|1|B2Small subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Structure of the human 80S ribosomeElectron microscopy52014-07-09
215T2C|1|AASmall subunit ribosomal RNA18S rRNAHomo sapiensEukaryaRF01960CryoEM structure of the human ribosome at 3.6 Angstrom resolutionElectron microscopy3.62017-01-25
226FEC|1|ASmall subunit ribosomal RNA18S ribosomal RNAHomo sapiensEukaryaRF01960Human cap-dependent 48S pre-initiation complexElectron microscopy6.32018-03-14
235A8L|1|BSmall subunit ribosomal RNAHUMAN 18S RIBOSOMAL RNAHomo sapiensEukaryaRF01960Human eRF1 and the hCMV nascent peptide in the translation termination complexElectron microscopy3.82015-12-02

Release history

Release9.15
Date2018-11-09

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_47503.3NR_all_47503.29.15(16) 5VYC|1|i1, 5VYC|1|i6, 5AJ0|1|B1, 5A8L|1|B, 5VYC|1|i5, 5T2C|1|AA, 5A2Q|1|2, 5VYC|1|i4, 5OA3|1|2, 6FEC|1|A, 4V6X|1|B2, 5VYC|1|i3, 5LKS|1|S2, 6EK0|1|S2, 4UG0|1|S2, 5VYC|1|i2(7) 6G5I|1|2, 6G51|1|2, 6G4W|1|2, 6G5H|1|2, 6G4S|1|2, 6G53|1|2, 6G18|1|2(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_47503.3NR_all_47503.49.16(22) 5VYC|1|i2, 5A2Q|1|2, 6G51|1|2, 5VYC|1|i4, 5AJ0|1|B1, 6G5H|1|2, 5VYC|1|i6, 5OA3|1|2, 6G18|1|2, 5VYC|1|i1, 4V6X|1|B2, 6G4W|1|2, 5VYC|1|i3, 5A8L|1|B, 6G53|1|2, 5VYC|1|i5, 5LKS|1|S2, 6G5I|1|2, 6FEC|1|A, 5T2C|1|AA, 4UG0|1|S2, 6G4S|1|2(1) 6EK0|1|S2(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
15A8L|1|BTitle: Human eRF1 and the hCMV nascent peptide in the translation termination complexELECTRON MICROSCOPY3.867
26EK0|1|S2Title: High-resolution cryo-EM structure of the human 80S ribosomeELECTRON MICROSCOPY2.91706
35AJ0|1|B1Title: Cryo electron microscopy of actively translating human polysomes (POST state).ELECTRON MICROSCOPY3.51708
46G18|1|2Title: Cryo-EM structure of a late human pre-40S ribosomal subunit - State CELECTRON MICROSCOPY3.61658
56G5I|1|2Title: Cryo-EM structure of a late human pre-40S ribosomal subunit - State RELECTRON MICROSCOPY3.51657
66G5H|1|2Title: Cryo-EM structure of a late human pre-40S ribosomal subunit - MatureELECTRON MICROSCOPY3.61665
75OA3|1|2Title: Human 40S-eIF2D-re-initiation complexELECTRON MICROSCOPY4.21661
85A2Q|1|2Title: Structure of the HCV IRES bound to the human ribosomeELECTRON MICROSCOPY3.91665
94V6X|1|B2Title: Structure of the human 80S ribosomeELECTRON MICROSCOPY51861
105VYC|1|i6Title: Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
115VYC|1|i1Title: Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
125VYC|1|i2Title: Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
135VYC|1|i5Title: Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
145VYC|1|i3Title: Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
155VYC|1|i4Title: Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1.X-RAY DIFFRACTION61742
165T2C|1|AATitle: CryoEM structure of the human ribosome at 3.6 Angstrom resolutionELECTRON MICROSCOPY3.61742
174UG0|1|S2Title: STRUCTURE OF THE HUMAN 80S RIBOSOMEELECTRON MICROSCOPY3.61742
185LKS|1|S2Title: Structure-function insights reveal the human ribosome as a cancer target for antibioticsELECTRON MICROSCOPY3.61742
196FEC|1|ATitle: Human cap-dependent 48S pre-initiation complexELECTRON MICROSCOPY6.31776
206G4S|1|2Title: Cryo-EM structure of a late human pre-40S ribosomal subunit - State BELECTRON MICROSCOPY41613
216G53|1|2Title: Cryo-EM structure of a late human pre-40S ribosomal subunit - State EELECTRON MICROSCOPY4.51659
226G4W|1|2Title: Cryo-EM structure of a late human pre-40S ribosomal subunit - State AELECTRON MICROSCOPY4.51563
236G51|1|2Title: Cryo-EM structure of a late human pre-40S ribosomal subunit - State DELECTRON MICROSCOPY4.11659

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