Equivalence class NR_all_39951.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4GKJ|1|X+ 4GKJ|1|W (rep) | tRNA ASL human mitochondrial Met, mRNA A-site fragment | synthetic construct | Synthetic | Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin. | X-ray diffraction | 3.3 | 2013-06-05 | ||
| 2 | 2KRY|1|A | RNA (5'-R(*(PSU)P*CP*GP*GP*GP*CP*CP*(RSQ)P*AP*UP*AP*CP*CP*CP*CP*GP*A)-3') | Solution structure of the human mitochondrial tRNAMet ASL containing the 5-formylcytidine modification in position 34 | Solution NMR | 2010-08-18 | |||||
| 3 | 4GKK|1|X+ 4GKK|1|W | tRNA ASL human mitochondrial Met, mRNA A-site fragment | synthetic construct | Synthetic | Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin | X-ray diffraction | 3.2 | 2013-06-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_39951.1 | NR_all_48512.1 | 3.0 | (1) 2KRY|1|A | (2) 4GKJ|1|X+4GKJ|1|W, 4GKK|1|X+4GKK|1|W | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_39951.1 | NR_20.0_69131.1 | 5.0 | (1) 4GKJ|1|X+4GKJ|1|W | (2) 4GKK|1|X+4GKK|1|W, 2KRY|1|A | (0) |
| NR_all_39951.1 | NR_20.0_76362.1 | 5.0 | (1) 4GKK|1|X+4GKK|1|W | (2) 2KRY|1|A, 4GKJ|1|X+4GKJ|1|W | (0) |
| NR_all_39951.1 | NR_3.5_69131.1 | 5.0 | (1) 4GKJ|1|X+4GKJ|1|W | (2) 2KRY|1|A, 4GKK|1|X+4GKK|1|W | (0) |
| NR_all_39951.1 | NR_3.5_76362.1 | 5.0 | (1) 4GKK|1|X+4GKK|1|W | (2) 2KRY|1|A, 4GKJ|1|X+4GKJ|1|W | (0) |
| NR_all_39951.1 | NR_4.0_69131.1 | 5.0 | (1) 4GKJ|1|X+4GKJ|1|W | (2) 4GKK|1|X+4GKK|1|W, 2KRY|1|A | (0) |
| NR_all_39951.1 | NR_4.0_76362.1 | 5.0 | (1) 4GKK|1|X+4GKK|1|W | (2) 4GKJ|1|X+4GKJ|1|W, 2KRY|1|A | (0) |
| NR_all_39951.1 | NR_all_69131.1 | 5.0 | (1) 4GKJ|1|X+4GKJ|1|W | (2) 4GKK|1|X+4GKK|1|W, 2KRY|1|A | (0) |
| NR_all_39951.1 | NR_all_76362.1 | 5.0 | (1) 4GKK|1|X+4GKK|1|W | (2) 4GKJ|1|X+4GKJ|1|W, 2KRY|1|A | (0) |
| NR_all_39951.1 | NR_all_85121.1 | 5.0 | (1) 2KRY|1|A | (2) 4GKK|1|X+4GKK|1|W, 4GKJ|1|X+4GKJ|1|W | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4GKK|1|X+4GKK|1|W | Title: Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUA-codon in the A-site and paromomycin | X-RAY DIFFRACTION | 3.2 | 5 | ||
| 2 | 4GKJ|1|X+4GKJ|1|W | Title: Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human mitochondrial anticodon stem loop (ASL) of transfer RNA Methionine (TRNAMET) bound to an mRNA with an AUG-codon in the A-site and paromomycin. | X-RAY DIFFRACTION | 3.3 | 8 | ||
| 3 | 2KRY|1|A | Title: Solution structure of the human mitochondrial tRNAMet ASL containing the 5-formylcytidine modification in position 34 | SOLUTION NMR | 15 |
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