Equivalence class NR_all_39143.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4A4U|1|A (rep) | 5'-R(*GP*GP*AP*CP*CP*CP*GP*GP*CP*UP*GP*AP*CP*GP *CP*UP*GP*GP*GP*UP*CP*C)-3' | Haloarcula marismortui | Archaea | UNAC Tetraloops: To What Extent Can They Mimic GNRA Tetraloops | Solution NMR | 2012-05-30 | |||
| 2 | 4A4T|1|A | 5'-R(*GP*GP*AP*CP*CP*CP*GP*GP*CP*UP*UP*AP*CP*GP *CP*UP*GP*GP*GP*UP*CP*C)-3' | Haloarcula marismortui | Archaea | UNAC Tetraloops: To What Extent Can They Mimic GNRA Tetraloops | Solution NMR | 2012-05-30 | |||
| 3 | 4A4S|1|A | 5'-R(*GP*GP*AP*CP*CP*CP*GP*GP*CP*UP*CP*AP*CP*GP *CP*UP*GP*GP*GP*UP*CP*C)-3' | Thermus thermophilus | Bacteria | UNAC Tetraloops: To What Extent Can They Mimic GNRA Tetraloops | Solution NMR | 2012-05-30 | |||
| 4 | 4A4R|1|A | 5'-R(*GMP*GP*AP*CP*CP*CP*GP*GP*CP*UP*AP*AP*CP*GP *CP*UP*GP*GP*GP*UP*CP*C)-3' | Haloarcula marismortui | Archaea | UNAC Tetraloops: To What Extent Can They Mimic GNRA Tetraloops | Solution NMR | 2012-05-30 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_39143.1 | NR_all_02864.1 | 5.0 | (1) 4A4T|1|A | (3) 4A4S|1|A, 4A4R|1|A, 4A4U|1|A | (0) |
| NR_all_39143.1 | NR_all_43954.1 | 5.0 | (1) 4A4S|1|A | (3) 4A4R|1|A, 4A4U|1|A, 4A4T|1|A | (0) |
| NR_all_39143.1 | NR_all_50581.1 | 5.0 | (1) 4A4R|1|A | (3) 4A4T|1|A, 4A4S|1|A, 4A4U|1|A | (0) |
| NR_all_39143.1 | NR_all_81204.1 | 5.0 | (1) 4A4U|1|A | (3) 4A4S|1|A, 4A4R|1|A, 4A4T|1|A | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4A4S|1|A | Title: UNAC Tetraloops: To What Extent Can They Mimic GNRA Tetraloops | SOLUTION NMR | 22 | |||
| 2 | 4A4T|1|A | Title: UNAC Tetraloops: To What Extent Can They Mimic GNRA Tetraloops | SOLUTION NMR | 22 | |||
| 3 | 4A4U|1|A | Title: UNAC Tetraloops: To What Extent Can They Mimic GNRA Tetraloops | SOLUTION NMR | 22 | |||
| 4 | 4A4R|1|A | Title: UNAC Tetraloops: To What Extent Can They Mimic GNRA Tetraloops | SOLUTION NMR | 21 |
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