Equivalence class NR_all_31143.1 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 3TUP|1|T (rep) | Transfer RNA | Thermus thermophilus tRNAPhe | Thermus thermophilus | Bacteria | RF00005 | Crystal structure of human mitochondrial PheRS complexed with tRNAPhe in the active open state | X-ray diffraction | 3.05 | 2011-11-23 |
2 | 2IY5|1|T | Transfer RNA | TRNAPHE | Thermus thermophilus | Bacteria | RF00005 | PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS complexed with tRNA and a phenylalanyl-adenylate analog | X-ray diffraction | 3.1 | 2006-09-06 |
3 | 3B0V|1|A | Transfer RNA | tRNA | Thermus thermophilus | Bacteria | RF00005 | tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA | X-ray diffraction | 3.51 | 2011-12-14 |
4 | 1EIY|1|C | Transfer RNA | TRNA(PHE) | Thermus thermophilus | Bacteria | RF00005 | THE CRYSTAL STRUCTURE OF PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH COGNATE TRNAPHE | X-ray diffraction | 3.3 | 2000-03-06 |
5 | 4V4Z|1|AD | Transfer RNA | tRNA PHE (unmodified bases) | Thermus thermophilus | Bacteria | RF00005 | 70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A. | X-ray diffraction | 4.51 | 2014-07-09 |
6 | 3B0V|1|B | Transfer RNA | tRNA | Thermus thermophilus | Bacteria | RF00005 | tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA | X-ray diffraction | 3.51 | 2011-12-14 |
7 | 4V4X|1|AD | Transfer RNA | tRNA PHE (unmodified bases) | Thermus thermophilus | Bacteria | RF00005 | Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons. | X-ray diffraction | 5 | 2014-07-09 |
Release history
Parents
This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
---|---|---|---|---|---|
NR_all_31143.1 | NR_all_53832.1 | 8.0 | (2) 2IY5|1|T, 1EIY|1|C | (5) 4V4Z|1|AD, 4V4X|1|AD, 3TUP|1|T, 3B0V|1|B, 3B0V|1|A | (0) |
NR_all_31143.1 | NR_all_90788.1 | 8.0 | (3) 3TUP|1|T, 3B0V|1|B, 3B0V|1|A | (4) 4V4Z|1|AD, 4V4X|1|AD, 2IY5|1|T, 1EIY|1|C | (0) |
Children
This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
---|---|---|---|---|---|
NR_all_31143.1 | NR_all_19010.1 | 9.16 | (2) 2IY5|1|T, 1EIY|1|C | (5) 3B0V|1|A, 3TUP|1|T, 4V4Z|1|AD, 3B0V|1|B, 4V4X|1|AD | (0) |
NR_all_31143.1 | NR_all_31143.2 | 9.16 | (5) 3B0V|1|B, 3TUP|1|T, 4V4X|1|AD, 4V4Z|1|AD, 3B0V|1|A | (2) 1EIY|1|C, 2IY5|1|T | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
---|---|---|---|---|---|---|---|
1 | 4V4X|1|AD | Title: Crystal structure of the 70S Thermus thermophilus ribosome showing how the 16S 3'-end mimicks mRNA E and P codons. | X-RAY DIFFRACTION | 5 | 76 | ||
2 | 4V4Z|1|AD | Title: 70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A. | X-RAY DIFFRACTION | 4.51 | 76 | ||
3 | 3B0V|1|B | Title: tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA | X-RAY DIFFRACTION | 3.51 | 72 | ||
4 | 3B0V|1|A | Title: tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA | X-RAY DIFFRACTION | 3.51 | 72 | ||
5 | 3TUP|1|T | Title: Crystal structure of human mitochondrial PheRS complexed with tRNAPhe in the active open state | X-RAY DIFFRACTION | 3.05 | 74 | ||
6 | 2IY5|1|T | Title: PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS complexed with tRNA and a phenylalanyl-adenylate analog | X-RAY DIFFRACTION | 3.1 | 76 | ||
7 | 1EIY|1|C | Title: THE CRYSTAL STRUCTURE OF PHENYLALANYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH COGNATE TRNAPHE | X-RAY DIFFRACTION | 3.3 | 76 |
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