Equivalence class NR_all_25350.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4UJE|1|A2+ 4UJE|1|A3 (rep) | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S Ribosomal RNA, 5.8S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | Electron microscopy | 6.9 | 2014-07-16 |
| 2 | 4UJC|1|A2+ 4UJC|1|A3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S RIBOSOMAL RNA, 5.8S RIBOSOMAL RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | Electron microscopy | 9.5 | 2014-07-30 |
| 3 | 4UJD|1|A2+ 4UJD|1|A3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S Ribosomal RNA, 5.8S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF02543 + RF00002 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | Electron microscopy | 8.9 | 2014-07-30 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2014-12-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_25350.1 | NR_20.0_65570.1 | 3.0 | (3) 4UJE|1|A2+4UJE|1|A3, 4UJC|1|A2+4UJC|1|A3, 4UJD|1|A2+4UJD|1|A3 | (0) | (8) 3JAH|1|5+3JAH|1|8, 4D5Y|1|2+4D5Y|1|3, 3JAG|1|5+3JAG|1|8, 3JAN|1|5+3JAN|1|8, 3JAJ|1|5+3JAJ|1|8, 3J92|1|5+3J92|1|8, 3JAI|1|5+3JAI|1|8, 4D67|1|2+4D67|1|3 |
| NR_all_25350.1 | NR_all_65570.1 | 3.0 | (3) 4UJC|1|A2+4UJC|1|A3, 4UJD|1|A2+4UJD|1|A3, 4UJE|1|A2+4UJE|1|A3 | (0) | (8) 3JAH|1|5+3JAH|1|8, 4D5Y|1|2+4D5Y|1|3, 3JAG|1|5+3JAG|1|8, 3JAN|1|5+3JAN|1|8, 3J92|1|5+3J92|1|8, 3JAJ|1|5+3JAJ|1|8, 3JAI|1|5+3JAI|1|8, 4D67|1|2+4D67|1|3 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4UJC|1|A2+4UJC|1|A3 | Title: mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 3616 | ||
| 2 | 4UJE|1|A2+4UJE|1|A3 | Title: Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | ELECTRON MICROSCOPY | 6.9 | 3616 | ||
| 3 | 4UJD|1|A2+4UJD|1|A3 | Title: mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 3616 |
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