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Equivalence class NR_all_24427.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15IBB|1|1K (rep)Transfer RNAtRNAVal, mRNAEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-ray diffraction2.962016-05-25
25IBB|1|3LTransfer RNAtRNAValEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-ray diffraction2.962016-05-25
35IBB|1|3KTransfer RNAtRNAValEscherichia coliBacteriaRF00005Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-ray diffraction2.962016-05-25
44V7A|1|A1Transfer RNAfMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3'Escherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4)Electron microscopy92014-07-09
54V6Y|1|A1Transfer RNAfMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3'Escherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)Electron microscopy122014-07-09
64V75|1|A1Transfer RNAfMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3'Escherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)Electron microscopy122014-07-09
74V6Z|1|A1Transfer RNAfMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3'Escherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)Electron microscopy122014-07-09
84V72|1|A1Transfer RNAfMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3'Escherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)Electron microscopy132014-07-09
94V79|1|A1Transfer RNAfMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3'Escherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)Electron microscopy152014-07-09
104V73|1|A1Transfer RNAfMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3'Escherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)Electron microscopy152014-07-09
114V70|1|A1Transfer RNAfMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3'Escherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)Electron microscopy172014-07-09
124V76|1|A1Transfer RNAfMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3'Escherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)Electron microscopy172014-07-09
134V77|1|A1Transfer RNAfMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3'Escherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)Electron microscopy172014-07-09
144V74|1|A1Transfer RNAfMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3'Escherichia coliBacteriaRF0000570S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)Electron microscopy172014-07-09
154V78|1|A1Transfer RNAfMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3'Escherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)Electron microscopy202014-07-09
164V71|1|A1Transfer RNAfMet-Val-tRNA-Val, 5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3'Escherichia coliBacteriaRF00005E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)Electron microscopy202014-07-09
172K4C|1|ATransfer RNA76-MEREscherichia coliBacteriaRF00005tRNAPhe-based homology model for tRNAVal refined against base N-H RDCs in two media and SAXS dataSolution NMR, solution scattering2008-12-09

Release history

Release8.09.09.19.29.39.49.59.69.79.89.99.109.119.129.139.14
Date2017-04-052017-10-262017-11-072017-12-022017-12-132017-12-212017-12-222018-01-042018-01-052018-01-102018-01-112018-01-122018-01-282018-04-012018-04-012018-09-14

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_24427.1NR_all_39557.18.0(2) 5IBB|1|3L, 5IBB|1|3K(15) 4V6Y|1|A1, 2K4C|1|A, 5IBB|1|1K, 4V7A|1|A1, 4V79|1|A1, 4V78|1|A1, 4V77|1|A1, 4V76|1|A1, 4V75|1|A1, 4V74|1|A1, 4V73|1|A1, 4V72|1|A1, 4V71|1|A1, 4V70|1|A1, 4V6Z|1|A1(0)
NR_all_24427.1NR_all_57830.18.0(1) 5IBB|1|1K(16) 5IBB|1|3L, 5IBB|1|3K, 4V7A|1|A1, 4V79|1|A1, 4V78|1|A1, 4V77|1|A1, 4V76|1|A1, 4V75|1|A1, 4V74|1|A1, 4V73|1|A1, 4V72|1|A1, 4V71|1|A1, 4V70|1|A1, 4V6Z|1|A1, 4V6Y|1|A1, 2K4C|1|A(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_24427.1NR_all_24427.29.15(17) 4V6Z|1|A1, 4V73|1|A1, 4V77|1|A1, 5IBB|1|1K, 4V6Y|1|A1, 4V72|1|A1, 4V76|1|A1, 4V7A|1|A1, 2K4C|1|A, 4V71|1|A1, 4V75|1|A1, 4V79|1|A1, 5IBB|1|3L, 4V70|1|A1, 4V74|1|A1, 4V78|1|A1, 5IBB|1|3K(0) (4) 6CAE|1|2y, 6CAE|1|2w, 6CAE|1|1y, 6CAE|1|1w

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
14V74|1|A1Title: 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)ELECTRON MICROSCOPY1770
24V6Z|1|A1Title: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)ELECTRON MICROSCOPY1270
34V71|1|A1Title: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)ELECTRON MICROSCOPY2070
44V6Y|1|A1Title: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)ELECTRON MICROSCOPY1270
54V73|1|A1Title: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)ELECTRON MICROSCOPY1570
64V79|1|A1Title: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)ELECTRON MICROSCOPY1570
74V75|1|A1Title: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)ELECTRON MICROSCOPY1270
84V77|1|A1Title: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)ELECTRON MICROSCOPY1770
94V7A|1|A1Title: E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4)ELECTRON MICROSCOPY970
104V76|1|A1Title: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)ELECTRON MICROSCOPY1770
114V78|1|A1Title: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3a)ELECTRON MICROSCOPY2070
125IBB|1|1KTitle: Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-RAY DIFFRACTION2.9667
134V70|1|A1Title: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)ELECTRON MICROSCOPY1770
144V72|1|A1Title: E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)ELECTRON MICROSCOPY1370
155IBB|1|3LTitle: Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-RAY DIFFRACTION2.9671
165IBB|1|3KTitle: Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-siteX-RAY DIFFRACTION2.9670
172K4C|1|ATitle: tRNAPhe-based homology model for tRNAVal refined against base N-H RDCs in two media and SAXS dataSOLUTION NMR, SOLUTION SCATTERING76

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