Equivalence class NR_all_23473.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4JIY|1|A (rep) | 5'-(CGUACG)-3' | RNA three-way junction stabilized by a supramolecular di-iron(II) cylinder drug | X-ray diffraction | 1.91 | 2013-09-04 | ||||
| 2 | 377D|1|A+ 377D|1|B | RNA-DNA (5'-R(*CP*GP*UP*AP*CP*DG)-3') | 5'-R(*CP*GP*UP*AP*CP*DG)-3' | X-ray diffraction | 1.76 | 1998-08-10 | ||||
| 3 | 377D|1|C+ 377D|1|D | RNA-DNA (5'-R(*CP*GP*UP*AP*CP*DG)-3') | 5'-R(*CP*GP*UP*AP*CP*DG)-3' | X-ray diffraction | 1.76 | 1998-08-10 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_23473.2 | NR_all_05341.1 | 4.0 | (1) 4JIY|1|A | (2) 377D|1|C+377D|1|D, 377D|1|A+377D|1|B | (0) |
| NR_all_23473.2 | NR_all_23473.1 | 4.0 | (2) 377D|1|C+377D|1|D, 377D|1|A+377D|1|B | (1) 4JIY|1|A | (0) |
Children
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 377D|1|C+377D|1|D | Title: 5'-R(*CP*GP*UP*AP*CP*DG)-3' | X-RAY DIFFRACTION | 1.76 | 5 | ||
| 2 | 377D|1|A+377D|1|B | Title: 5'-R(*CP*GP*UP*AP*CP*DG)-3' | X-RAY DIFFRACTION | 1.76 | 5 | ||
| 3 | 4JIY|1|A | Title: RNA three-way junction stabilized by a supramolecular di-iron(II) cylinder drug | X-RAY DIFFRACTION | 1.91 | 6 |
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