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Equivalence class NR_all_23371.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15C0Y|1|D (rep)poly U RNAsynthetic constructSyntheticCrystal structure of the Rrp6 catalytic domain bound to poly(U) RNAX-ray diffraction2.12015-08-05
25C0Y|1|Cpoly U RNAsynthetic constructSyntheticCrystal structure of the Rrp6 catalytic domain bound to poly(U) RNAX-ray diffraction2.12015-08-05
32XB2|1|ERNA POLY-U-RIBONUCLEOTIDEsynthetic constructSyntheticCrystal structure of the core Mago-Y14-eIF4AIII-Barentsz-UPF3b assembly shows how the EJC is bridged to the NMD machineryX-ray diffraction3.42010-05-12
42XB2|1|RRNA POLY-U-RIBONUCLEOTIDEsynthetic constructSyntheticCrystal structure of the core Mago-Y14-eIF4AIII-Barentsz-UPF3b assembly shows how the EJC is bridged to the NMD machineryX-ray diffraction3.42010-05-12
52J0Q|1|E5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'The crystal structure of the Exon Junction Complex at 3.2 A resolutionX-ray diffraction3.22006-08-30
62J0S|1|E5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP *UP*UP*UP*UP*U)-3'The crystal structure of the Exon Junction Complex at 2.2 A resolutionX-ray diffraction2.212006-09-06
72J0Q|1|H5'-R(*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*UP*U)-3'The crystal structure of the Exon Junction Complex at 3.2 A resolutionX-ray diffraction3.22006-08-30

Release history

Release4.0
Date2016-07-25

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_all_23371.1NR_all_10282.14.0(1) 5C0Y|1|C(6) 5C0Y|1|D, 2XB2|1|R, 2XB2|1|E, 2J0S|1|E, 2J0Q|1|H, 2J0Q|1|E(0)
NR_all_23371.1NR_all_15410.14.0(1) 2XB2|1|E(6) 5C0Y|1|D, 5C0Y|1|C, 2XB2|1|R, 2J0S|1|E, 2J0Q|1|H, 2J0Q|1|E(0)
NR_all_23371.1NR_all_45480.14.0(3) 2J0S|1|E, 2J0Q|1|H, 2J0Q|1|E(4) 5C0Y|1|D, 5C0Y|1|C, 2XB2|1|R, 2XB2|1|E(0)
NR_all_23371.1NR_all_63334.14.0(1) 2XB2|1|R(6) 2J0Q|1|E, 5C0Y|1|D, 5C0Y|1|C, 2XB2|1|E, 2J0S|1|E, 2J0Q|1|H(0)
NR_all_23371.1NR_all_96782.14.0(1) 5C0Y|1|D(6) 5C0Y|1|C, 2XB2|1|R, 2XB2|1|E, 2J0S|1|E, 2J0Q|1|H, 2J0Q|1|E(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_all_23371.1NR_2.5_49484.15.0(1) 2J0S|1|E(6) 2J0Q|1|E, 2XB2|1|E, 5C0Y|1|C, 2J0Q|1|H, 2XB2|1|R, 5C0Y|1|D(0)
NR_all_23371.1NR_2.5_78040.15.0(1) 5C0Y|1|C(6) 2J0Q|1|H, 2XB2|1|E, 5C0Y|1|D, 2J0Q|1|E, 2J0S|1|E, 2XB2|1|R(0)
NR_all_23371.1NR_2.5_91898.15.0(1) 5C0Y|1|D(6) 2XB2|1|R, 2J0Q|1|H, 2XB2|1|E, 5C0Y|1|C, 2J0Q|1|E, 2J0S|1|E(0)
NR_all_23371.1NR_20.0_49484.15.0(3) 2J0Q|1|H, 2J0Q|1|E, 2J0S|1|E(4) 2XB2|1|R, 5C0Y|1|D, 2XB2|1|E, 5C0Y|1|C(0)
NR_all_23371.1NR_20.0_59917.15.0(1) 2XB2|1|R(6) 2J0S|1|E, 5C0Y|1|C, 2J0Q|1|H, 2XB2|1|E, 5C0Y|1|D, 2J0Q|1|E(0)
NR_all_23371.1NR_20.0_71598.15.0(1) 2XB2|1|E(6) 2XB2|1|R, 5C0Y|1|D, 2J0Q|1|E, 2J0S|1|E, 5C0Y|1|C, 2J0Q|1|H(0)
NR_all_23371.1NR_20.0_78040.15.0(1) 5C0Y|1|C(6) 2J0Q|1|H, 2XB2|1|E, 5C0Y|1|D, 2J0Q|1|E, 2J0S|1|E, 2XB2|1|R(0)
NR_all_23371.1NR_20.0_91898.15.0(1) 5C0Y|1|D(6) 2J0Q|1|E, 2J0S|1|E, 2XB2|1|R, 2J0Q|1|H, 2XB2|1|E, 5C0Y|1|C(0)
NR_all_23371.1NR_3.0_49484.15.0(1) 2J0S|1|E(6) 2J0Q|1|H, 2XB2|1|R, 5C0Y|1|D, 2J0Q|1|E, 2XB2|1|E, 5C0Y|1|C(0)
NR_all_23371.1NR_3.0_78040.15.0(1) 5C0Y|1|C(6) 2XB2|1|R, 2J0Q|1|H, 2XB2|1|E, 5C0Y|1|D, 2J0Q|1|E, 2J0S|1|E(0)
NR_all_23371.1NR_3.0_91898.15.0(1) 5C0Y|1|D(6) 5C0Y|1|C, 2J0Q|1|E, 2J0S|1|E, 2XB2|1|R, 2J0Q|1|H, 2XB2|1|E(0)
NR_all_23371.1NR_3.5_49484.15.0(3) 2J0S|1|E, 2J0Q|1|E, 2J0Q|1|H(4) 2XB2|1|E, 2XB2|1|R, 5C0Y|1|C, 5C0Y|1|D(0)
NR_all_23371.1NR_3.5_59917.15.0(1) 2XB2|1|R(6) 2XB2|1|E, 5C0Y|1|D, 2J0Q|1|E, 2J0S|1|E, 5C0Y|1|C, 2J0Q|1|H(0)
NR_all_23371.1NR_3.5_71598.15.0(1) 2XB2|1|E(6) 2J0Q|1|H, 2XB2|1|R, 5C0Y|1|D, 2J0Q|1|E, 2J0S|1|E, 5C0Y|1|C(0)
NR_all_23371.1NR_3.5_78040.15.0(1) 5C0Y|1|C(6) 2J0Q|1|E, 2J0S|1|E, 2XB2|1|R, 2J0Q|1|H, 2XB2|1|E, 5C0Y|1|D(0)
NR_all_23371.1NR_3.5_91898.15.0(1) 5C0Y|1|D(6) 2J0Q|1|H, 2XB2|1|E, 5C0Y|1|C, 2J0Q|1|E, 2J0S|1|E, 2XB2|1|R(0)
NR_all_23371.1NR_4.0_49484.15.0(3) 2J0S|1|E, 2J0Q|1|H, 2J0Q|1|E(4) 5C0Y|1|D, 2XB2|1|E, 5C0Y|1|C, 2XB2|1|R(0)
NR_all_23371.1NR_4.0_59917.15.0(1) 2XB2|1|R(6) 2J0Q|1|H, 2XB2|1|E, 5C0Y|1|D, 2J0Q|1|E, 2J0S|1|E, 5C0Y|1|C(0)
NR_all_23371.1NR_4.0_71598.15.0(1) 2XB2|1|E(6) 2J0S|1|E, 5C0Y|1|C, 2J0Q|1|H, 2XB2|1|R, 5C0Y|1|D, 2J0Q|1|E(0)
NR_all_23371.1NR_4.0_78040.15.0(1) 5C0Y|1|C(6) 2XB2|1|E, 5C0Y|1|D, 2J0Q|1|E, 2J0S|1|E, 2XB2|1|R, 2J0Q|1|H(0)
NR_all_23371.1NR_4.0_91898.15.0(1) 5C0Y|1|D(6) 2J0Q|1|H, 2XB2|1|E, 5C0Y|1|C, 2J0Q|1|E, 2J0S|1|E, 2XB2|1|R(0)
NR_all_23371.1NR_all_49484.15.0(3) 2J0Q|1|H, 2J0Q|1|E, 2J0S|1|E(4) 5C0Y|1|D, 2XB2|1|E, 2XB2|1|R, 5C0Y|1|C(0)
NR_all_23371.1NR_all_59917.15.0(1) 2XB2|1|R(6) 5C0Y|1|C, 2J0Q|1|H, 2XB2|1|E, 5C0Y|1|D, 2J0Q|1|E, 2J0S|1|E(0)
NR_all_23371.1NR_all_71598.15.0(1) 2XB2|1|E(6) 5C0Y|1|D, 2J0Q|1|E, 2J0S|1|E, 5C0Y|1|C, 2J0Q|1|H, 2XB2|1|R(0)
NR_all_23371.1NR_all_78040.15.0(1) 5C0Y|1|C(6) 2J0Q|1|H, 2XB2|1|E, 5C0Y|1|D, 2J0Q|1|E, 2J0S|1|E, 2XB2|1|R(0)
NR_all_23371.1NR_all_91898.15.0(1) 5C0Y|1|D(6) 2J0S|1|E, 2XB2|1|R, 2J0Q|1|H, 2XB2|1|E, 5C0Y|1|C, 2J0Q|1|E(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
12J0Q|1|ETitle: The crystal structure of the Exon Junction Complex at 3.2 A resolutionX-RAY DIFFRACTION3.26
22J0S|1|ETitle: The crystal structure of the Exon Junction Complex at 2.2 A resolutionX-RAY DIFFRACTION2.216
32J0Q|1|HTitle: The crystal structure of the Exon Junction Complex at 3.2 A resolutionX-RAY DIFFRACTION3.26
42XB2|1|ETitle: Crystal structure of the core Mago-Y14-eIF4AIII-Barentsz-UPF3b assembly shows how the EJC is bridged to the NMD machineryX-RAY DIFFRACTION3.48
52XB2|1|RTitle: Crystal structure of the core Mago-Y14-eIF4AIII-Barentsz-UPF3b assembly shows how the EJC is bridged to the NMD machineryX-RAY DIFFRACTION3.47
65C0Y|1|DTitle: Crystal structure of the Rrp6 catalytic domain bound to poly(U) RNAX-RAY DIFFRACTION2.19
75C0Y|1|CTitle: Crystal structure of the Rrp6 catalytic domain bound to poly(U) RNAX-RAY DIFFRACTION2.15

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