Equivalence class NR_all_21945.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2L8W|1|A+ 2L8W|1|B (rep) | RNA (5'-R(*CP*CP*GP*CP*UP*GP*CP*GP*G)-3') | r(CCGCUGCGG)2 UU Internal Loop Found in Myotonic Dystrophy Type 1 - UU pair with two hydrogen bond pairs | Solution NMR | 2011-02-23 | |||||
| 2 | 2L8U|1|A+ 2L8U|1|B | RNA (5'-R(*CP*CP*GP*CP*UP*GP*CP*GP*G)-3') | NMR Spectroscopy and Molecular Dynamics Simulation of r(CCGCUGCGG)2 Reveal a Dynamic UU Internal Loop Found in Myotonic Dystrophy Type 1 - UU pair with one hydrogen bond pair | Solution NMR | 2011-02-23 | |||||
| 3 | 2L8C|1|A+ 2L8C|1|B | RNA (5'-R(*CP*CP*GP*CP*UP*GP*CP*GP*G)-3') | NMR Spectroscopy and Molecular Dynamics Simulation of r(CCGCUGCGG)2 Reveal a Dynamic UU Internal Loop Found in Myotonic Dystrophy Type 1 - UU pair with zero hydrogen bond pairs | Solution NMR | 2011-02-23 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_21945.1 | NR_all_54490.1 | 5.0 | (1) 2L8C|1|A+2L8C|1|B | (2) 2L8U|1|A+2L8U|1|B, 2L8W|1|A+2L8W|1|B | (0) |
| NR_all_21945.1 | NR_all_75714.1 | 5.0 | (1) 2L8W|1|A+2L8W|1|B | (2) 2L8C|1|A+2L8C|1|B, 2L8U|1|A+2L8U|1|B | (0) |
| NR_all_21945.1 | NR_all_98819.1 | 5.0 | (1) 2L8U|1|A+2L8U|1|B | (2) 2L8C|1|A+2L8C|1|B, 2L8W|1|A+2L8W|1|B | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2L8W|1|A+2L8W|1|B | Title: r(CCGCUGCGG)2 UU Internal Loop Found in Myotonic Dystrophy Type 1 - UU pair with two hydrogen bond pairs | SOLUTION NMR | 9 | |||
| 2 | 2L8C|1|A+2L8C|1|B | Title: NMR Spectroscopy and Molecular Dynamics Simulation of r(CCGCUGCGG)2 Reveal a Dynamic UU Internal Loop Found in Myotonic Dystrophy Type 1 - UU pair with zero hydrogen bond pairs | SOLUTION NMR | 9 | |||
| 3 | 2L8U|1|A+2L8U|1|B | Title: NMR Spectroscopy and Molecular Dynamics Simulation of r(CCGCUGCGG)2 Reveal a Dynamic UU Internal Loop Found in Myotonic Dystrophy Type 1 - UU pair with one hydrogen bond pair | SOLUTION NMR | 9 |
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