Equivalence class NR_all_17922.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4KHP|1|X (rep) | Fragment of messenger RNA | Thermus thermophilus | Bacteria | Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin | X-ray diffraction | 3.1 | 2013-06-05 | ||
| 2 | 1IBM|1|X | P-SITE MESSENGER RNA FRAGMENT | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE | X-ray diffraction | 3.31 | 2001-05-04 | ||||
| 3 | 1HR0|1|X | FRAGMENT OF MESSENGER RNA | Thermus thermophilus | Bacteria | CRYSTAL STRUCTURE OF INITIATION FACTOR IF1 BOUND TO THE 30S RIBOSOMAL SUBUNIT | X-ray diffraction | 3.2 | 2001-01-24 | ||
| 4 | 1IBL|1|X | P-SITE MESSENGER RNA FRAGMENT | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN | X-ray diffraction | 3.11 | 2001-05-04 | ||||
| 5 | 1HNZ|1|X | FRAGMENT OF MESSENGER RNA | Thermus thermophilus | Bacteria | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH HYGROMYCIN B | X-ray diffraction | 3.3 | 2001-02-21 | ||
| 6 | 1HNW|1|X | FRAGMENT OF MESSENGER RNA | Thermus thermophilus | Bacteria | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE | X-ray diffraction | 3.4 | 2001-02-21 | ||
| 7 | 1HNX|1|X | FRAGMENT OF MESSENGER RNA | Thermus thermophilus | Bacteria | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN | X-ray diffraction | 3.4 | 2001-02-21 | ||
| 8 | 1IBK|1|X | P-SITE MESSENGER RNA FRAGMENT | Thermus thermophilus | Bacteria | STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN | X-ray diffraction | 3.31 | 2001-05-04 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_all_17922.2 | NR_all_09671.1 | 4.0 | (2) 4KHP|1|X, 1HNX|1|X | (6) 1IBM|1|X, 1IBL|1|X, 1IBK|1|X, 1HR0|1|X, 1HNZ|1|X, 1HNW|1|X | (0) |
| NR_all_17922.2 | NR_all_17922.1 | 4.0 | (6) 1IBM|1|X, 1IBL|1|X, 1IBK|1|X, 1HR0|1|X, 1HNZ|1|X, 1HNW|1|X | (2) 4KHP|1|X, 1HNX|1|X | (0) |
Children
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1IBM|1|X | Title: STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE | X-RAY DIFFRACTION | 3.31 | 6 | ||
| 2 | 1IBL|1|X | Title: STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH A MESSENGER RNA FRAGMENT AND COGNATE TRANSFER RNA ANTICODON STEM-LOOP BOUND AT THE A SITE AND WITH THE ANTIBIOTIC PAROMOMYCIN | X-RAY DIFFRACTION | 3.11 | 6 | ||
| 3 | 1HR0|1|X | Title: CRYSTAL STRUCTURE OF INITIATION FACTOR IF1 BOUND TO THE 30S RIBOSOMAL SUBUNIT | X-RAY DIFFRACTION | 3.2 | 6 | ||
| 4 | 1HNZ|1|X | Title: STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH HYGROMYCIN B | X-RAY DIFFRACTION | 3.3 | 6 | ||
| 5 | 1HNW|1|X | Title: STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH TETRACYCLINE | X-RAY DIFFRACTION | 3.4 | 6 | ||
| 6 | 1IBK|1|X | Title: STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH THE ANTIBIOTIC PAROMOMYCIN | X-RAY DIFFRACTION | 3.31 | 6 | ||
| 7 | 4KHP|1|X | Title: Structure of the Thermus thermophilus 30S ribosomal subunit in complex with de-6-MSA-pactamycin | X-RAY DIFFRACTION | 3.1 | 6 | ||
| 8 | 1HNX|1|X | Title: STRUCTURE OF THE THERMUS THERMOPHILUS 30S RIBOSOMAL SUBUNIT IN COMPLEX WITH PACTAMYCIN | X-RAY DIFFRACTION | 3.4 | 6 |
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