Equivalence class NR_all_16857.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1QZC|1|B (rep) | Large subunit ribosomal RNA fragment | 23S rRNA | Escherichia coli | Bacteria | Coordinates of S12, SH44, LH69 and SRL separately fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome | Electron microscopy | 9 | 2003-11-04 | |
| 2 | 3J0E|1|A | Large subunit ribosomal RNA fragment | ribosomal 23S RNA | Escherichia coli | Bacteria | Models for the T. thermophilus ribosome recycling factor and the E. coli elongation factor G bound to the E. coli post-termination complex | Electron microscopy | 9.9 | 2012-04-25 | |
| 3 | 3J0D|1|B | Large subunit ribosomal RNA fragment | ribosomal 23S RNA | Escherichia coli | Bacteria | Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex | Electron microscopy | 11.1 | 2012-04-25 | |
| 4 | 1T1O|1|B | Large subunit ribosomal RNA fragment | 19-mer fragment of the 23S rRNA | Escherichia coli | Bacteria | Components of the control 70S ribosome to provide reference for the RRF binding site | Electron microscopy | 12 | 2004-06-15 | |
| 5 | 1MVR|1|C | Large subunit ribosomal RNA fragment | Helix 69 of 23S rRNA | Escherichia coli | Bacteria | Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S Ribosome | Electron microscopy | 12.8 | 2003-04-01 | |
| 6 | 2MER|1|A | RNA_(5'-R(P*GP*GP*CP*CP*GP*(PSU)P*AP*AP*CP*(PSU)P*AP*(PSU)P*AP*AP*CP*GP*GP*UP*C)-3') | Structure of helix 69 from escherichia coli 23s ribosomal rna | Solution NMR | 2014-01-01 | |||||
| 7 | 2MEQ|1|A | RNA_(5'-R(P*GP*GP*CP*CP*GP*UP*AP*AP*CP*UP*AP*UP*AP*AP*CP*GP*GP*UP*C)-3') | Structure of Helix 69 from Escherichia coli 23S Ribosomal RNA | Solution NMR | 2014-01-01 |
Release history
| Release | 8.0 | 9.0 | 9.1 | 9.2 | 9.3 | 9.4 | 9.5 | 9.6 | 9.7 | 9.8 | 9.9 | 9.10 | 9.11 | 9.12 | 9.13 | 9.14 | 9.15 | 9.16 | 9.17 | 9.18 | 9.19 | 9.20 | 9.21 | 9.22 | 9.23 | 9.24 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2017-04-05 | 2017-10-26 | 2017-11-07 | 2017-12-02 | 2017-12-13 | 2017-12-21 | 2017-12-22 | 2018-01-04 | 2018-01-05 | 2018-01-10 | 2018-01-11 | 2018-01-12 | 2018-01-28 | 2018-04-01 | 2018-04-01 | 2018-09-14 | 2018-11-09 | 2018-11-16 | 2018-11-23 | 2018-11-30 | 2018-12-05 | 2018-12-12 | 2018-12-19 | 2018-12-26 | 2019-01-02 | 2019-01-09 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1MVR|1|C | Title: Decoding Center & Peptidyl transferase center from the X-ray structure of the Thermus thermophilus 70S ribosome, aligned to the low resolution Cryo-EM map of E.coli 70S Ribosome | ELECTRON MICROSCOPY | 12.8 | 19 | ||
| 2 | 2MEQ|1|A | Title: Structure of Helix 69 from Escherichia coli 23S Ribosomal RNA | SOLUTION NMR | 19 | |||
| 3 | 2MER|1|A | Title: Structure of helix 69 from escherichia coli 23s ribosomal rna | SOLUTION NMR | 16 | |||
| 4 | 3J0D|1|B | Title: Models for the T. thermophilus ribosome recycling factor bound to the E. coli post-termination complex | ELECTRON MICROSCOPY | 11.1 | 22 | ||
| 5 | 3J0E|1|A | Title: Models for the T. thermophilus ribosome recycling factor and the E. coli elongation factor G bound to the E. coli post-termination complex | ELECTRON MICROSCOPY | 9.9 | 22 | ||
| 6 | 1T1O|1|B | Title: Components of the control 70S ribosome to provide reference for the RRF binding site | ELECTRON MICROSCOPY | 12 | 19 | ||
| 7 | 1QZC|1|B | Title: Coordinates of S12, SH44, LH69 and SRL separately fitted into the cryo-EM map of EF-Tu ternary complex (GDP.Kirromycin) bound 70S ribosome | ELECTRON MICROSCOPY | 9 | 20 |
Coloring options: