Equivalence class NR_all_14856.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4TUW|1|C (rep) | Histone 3' UTR stem-loop | HISTONE MRNA 3' STEM LOOP | synthetic construct | Synthetic | RF00032 | drosophila stem-loop binding protein complexed with histone mRNA stem-loop, phospho mimic of TPNK and C-terminal region | X-ray diffraction | 2.9 | 2014-07-23 |
| 2 | 1JU7|1|A | Histone 3' UTR stem-loop | 5'-R(*GP*GP*CP*CP*AP*AP*AP*GP*GP*CP*CP*CP*UP*UP*UP*UP*CP*AP*GP*GP*GP*CP*CP*AP*CP*CP*CP*A)-3' | RF00032 | NMR Solution Structure of the RNA Hairpin Binding Site for the Histone Stem-loop Binding Protein | Solution NMR | 2002-03-20 | |||
| 3 | 1JWC|1|A | Histone 3' UTR stem-loop | 5'-R(*GP*GP*CP*CP*AP*AP*AP*GP*GP*CP*CP*CP*UP*UP*UP*UP*CP*AP*GP*GP*GP*CP*CP*AP*CP*CP*CP*A)-3' | RF00032 | NMR SOLUTION STRUCTURE OF THE RNA HAIRPIN BINDING SITE FOR THE HISTONE STEM-LOOP BINDING PROTEIN | Solution NMR | 2002-03-20 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_14856.1 | NR_20.0_73951.1 | 5.0 | (1) 4TUW|1|C | (2) 1JWC|1|A, 1JU7|1|A | (0) |
| NR_all_14856.1 | NR_3.0_73951.1 | 5.0 | (1) 4TUW|1|C | (2) 1JWC|1|A, 1JU7|1|A | (0) |
| NR_all_14856.1 | NR_3.5_73951.1 | 5.0 | (1) 4TUW|1|C | (2) 1JWC|1|A, 1JU7|1|A | (0) |
| NR_all_14856.1 | NR_4.0_73951.1 | 5.0 | (1) 4TUW|1|C | (2) 1JU7|1|A, 1JWC|1|A | (0) |
| NR_all_14856.1 | NR_all_14856.2 | 5.0 | (2) 1JU7|1|A, 1JWC|1|A | (1) 4TUW|1|C | (0) |
| NR_all_14856.1 | NR_all_73951.1 | 5.0 | (1) 4TUW|1|C | (2) 1JU7|1|A, 1JWC|1|A | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1JWC|1|A | Title: NMR SOLUTION STRUCTURE OF THE RNA HAIRPIN BINDING SITE FOR THE HISTONE STEM-LOOP BINDING PROTEIN | SOLUTION NMR | 16 | |||
| 2 | 1JU7|1|A | Title: NMR Solution Structure of the RNA Hairpin Binding Site for the Histone Stem-loop Binding Protein | SOLUTION NMR | 16 | |||
| 3 | 4TUW|1|C | Title: drosophila stem-loop binding protein complexed with histone mRNA stem-loop, phospho mimic of TPNK and C-terminal region | X-RAY DIFFRACTION | 2.9 | 28 |
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