Equivalence class NR_all_10200.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2M24|9|A (rep) | RNA (29-MER) | Saccharomyces cerevisiae | Eukarya | NMR solution structure of the d3'-hairpin including the exon binding site 1 (EBS1) of the group II intron Sc.ai5gamma | Solution NMR | 2013-12-18 | |||
| 2 | 2M23|1|A | RNA (29-MER), RNA_(5'-R(*CP*AP*GP*UP*GP*UP*C)-3')_ | Saccharomyces cerevisiae | Eukarya | NMR solution structure of the d3'-hairpin of the group II intron Sc.ai5gamma including EBS1 bound to IBS1 | Solution NMR | 2013-12-18 | |||
| 3 | 2M1V|1|A | RNA (29-MER) | Saccharomyces cerevisiae | Eukarya | NMR solution structure of the d3'-hairpin from the Sc.ai5gamma group II intron including the EBS1:dIBS1 RNA:DNA hybrid | Solution NMR | 2014-06-11 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_10200.1 | NR_all_57586.1 | 5.0 | (1) 2M23|1|A | (2) 2M24|9|A, 2M1V|1|A | (0) |
| NR_all_10200.1 | NR_all_72257.1 | 5.0 | (1) 2M1V|1|A | (2) 2M24|9|A, 2M23|1|A | (0) |
| NR_all_10200.1 | NR_all_86134.1 | 5.0 | (1) 2M24|9|A | (2) 2M23|1|A, 2M1V|1|A | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2M1V|1|A | Title: NMR solution structure of the d3'-hairpin from the Sc.ai5gamma group II intron including the EBS1:dIBS1 RNA:DNA hybrid | SOLUTION NMR | 29 | |||
| 2 | 2M23|1|A | Title: NMR solution structure of the d3'-hairpin of the group II intron Sc.ai5gamma including EBS1 bound to IBS1 | SOLUTION NMR | 29 | |||
| 3 | 2M24|9|A | Title: NMR solution structure of the d3'-hairpin including the exon binding site 1 (EBS1) of the group II intron Sc.ai5gamma | SOLUTION NMR | 29 |
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