Equivalence class NR_all_10138.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4UJE|1|A4 (rep) | 5S ribosomal RNA | 5S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | Electron microscopy | 6.9 | 2014-07-16 |
| 2 | 4UJC|1|A4 | 5S ribosomal RNA | 5S RIBOSOMAL RNA | Oryctolagus cuniculus | Eukarya | RF00001 | mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | Electron microscopy | 9.5 | 2014-07-30 |
| 3 | 4UJD|1|A4 | 5S ribosomal RNA | 5S Ribosomal RNA | Oryctolagus cuniculus | Eukarya | RF00001 | mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | Electron microscopy | 8.9 | 2014-07-30 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2014-12-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_all_10138.1 | NR_20.0_76659.1 | 3.0 | (3) 4UJE|1|A4, 4UJC|1|A4, 4UJD|1|A4 | (0) | (8) 4D67|1|4, 3JAI|1|7, 3JAH|1|7, 4D5Y|1|4, 3JAG|1|7, 3JAN|1|7, 3J92|1|7, 3JAJ|1|7 |
| NR_all_10138.1 | NR_all_76659.1 | 3.0 | (3) 4UJC|1|A4, 4UJD|1|A4, 4UJE|1|A4 | (0) | (8) 3JAI|1|7, 4D67|1|4, 3JAH|1|7, 4D5Y|1|4, 3JAG|1|7, 3JAN|1|7, 3J92|1|7, 3JAJ|1|7 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4UJC|1|A4 | Title: mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state | ELECTRON MICROSCOPY | 9.5 | 119 | ||
| 2 | 4UJD|1|A4 | Title: mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state | ELECTRON MICROSCOPY | 8.9 | 119 | ||
| 3 | 4UJE|1|A4 | Title: Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement | ELECTRON MICROSCOPY | 6.9 | 119 |
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