Equivalence class NR_all_00646.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2G3S|1|I (rep) | 5'-R(*GP*GP*CP*GP*UP*GP*CP*C)-3' | RNA structure containing GU base pairs | X-ray diffraction | 1.5 | 2007-01-16 | ||||
| 2 | 1EKD|1|A | RNA (5'-R(*GP*GP*CP*GP*UP*GP*CP*C)-3') | NMR AND MOLECULAR MODELING REVEAL THAT DIFFERENT HYDROGEN BONDING PATTERNS ARE POSSIBLE FOR GU PAIRS: ONE HYDROGEN BOND FOR EACH GU PAIR IN R(GGCGUGCC)2 AND TWO FOR EACH GU PAIR IN R(GAGUGCUC)2 | Solution NMR | 2000-11-13 | |||||
| 3 | 2G3S|1|A | 5'-R(*GP*GP*CP*GP*UP*GP*CP*C)-3' | RNA structure containing GU base pairs | X-ray diffraction | 1.5 | 2007-01-16 | ||||
| 4 | 2G3S|1|C | 5'-R(*GP*GP*CP*GP*UP*GP*CP*C)-3' | RNA structure containing GU base pairs | X-ray diffraction | 1.5 | 2007-01-16 | ||||
| 5 | 2G3S|1|E | 5'-R(*GP*GP*CP*GP*UP*GP*CP*C)-3' | RNA structure containing GU base pairs | X-ray diffraction | 1.5 | 2007-01-16 | ||||
| 6 | 2G3S|1|G | 5'-R(*GP*GP*CP*GP*UP*GP*CP*C)-3' | RNA structure containing GU base pairs | X-ray diffraction | 1.5 | 2007-01-16 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2014-12-05 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1EKD|1|A | Title: NMR AND MOLECULAR MODELING REVEAL THAT DIFFERENT HYDROGEN BONDING PATTERNS ARE POSSIBLE FOR GU PAIRS: ONE HYDROGEN BOND FOR EACH GU PAIR IN R(GGCGUGCC)2 AND TWO FOR EACH GU PAIR IN R(GAGUGCUC)2 | SOLUTION NMR | 8 | |||
| 2 | 2G3S|1|I | Title: RNA structure containing GU base pairs | X-RAY DIFFRACTION | 1.5 | 8 | ||
| 3 | 2G3S|1|G | Title: RNA structure containing GU base pairs | X-RAY DIFFRACTION | 1.5 | 8 | ||
| 4 | 2G3S|1|A | Title: RNA structure containing GU base pairs | X-RAY DIFFRACTION | 1.5 | 8 | ||
| 5 | 2G3S|1|C | Title: RNA structure containing GU base pairs | X-RAY DIFFRACTION | 1.5 | 8 | ||
| 6 | 2G3S|1|E | Title: RNA structure containing GU base pairs | X-RAY DIFFRACTION | 1.5 | 8 |
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