Equivalence class NR_4.0_99567.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4JRD|1|B (rep) | RNA (5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | Crystal structure of the parallel double-stranded helix of poly(A) RNA | X-ray diffraction | 1 | 2013-06-05 | ||||
| 2 | 4JRD|1|A | RNA (5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | Crystal structure of the parallel double-stranded helix of poly(A) RNA | X-ray diffraction | 1 | 2013-06-05 | ||||
| 3 | 4F02|1|B | RNA (5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | Crystal structure of the PABP-binding site of eIF4G in complex with RRM1-2 of PABP and poly(A) | X-ray diffraction | 2 | 2012-08-08 | ||||
| 4 | 4F02|1|E | RNA (5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | Crystal structure of the PABP-binding site of eIF4G in complex with RRM1-2 of PABP and poly(A) | X-ray diffraction | 2 | 2012-08-08 | ||||
| 5 | 1CVJ|1|M | 5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3' | X-RAY CRYSTAL STRUCTURE OF THE POLY(A)-BINDING PROTEIN IN COMPLEX WITH POLYADENYLATE RNA | X-ray diffraction | 2.6 | 1999-10-04 | ||||
| 6 | 1CVJ|1|Q | 5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3' | X-RAY CRYSTAL STRUCTURE OF THE POLY(A)-BINDING PROTEIN IN COMPLEX WITH POLYADENYLATE RNA | X-ray diffraction | 2.6 | 1999-10-04 | ||||
| 7 | 1CVJ|1|N | 5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3' | X-RAY CRYSTAL STRUCTURE OF THE POLY(A)-BINDING PROTEIN IN COMPLEX WITH POLYADENYLATE RNA | X-ray diffraction | 2.6 | 1999-10-04 | ||||
| 8 | 1CVJ|1|O | 5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3' | X-RAY CRYSTAL STRUCTURE OF THE POLY(A)-BINDING PROTEIN IN COMPLEX WITH POLYADENYLATE RNA | X-ray diffraction | 2.6 | 1999-10-04 | ||||
| 9 | 1CVJ|1|S | 5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3' | X-RAY CRYSTAL STRUCTURE OF THE POLY(A)-BINDING PROTEIN IN COMPLEX WITH POLYADENYLATE RNA | X-ray diffraction | 2.6 | 1999-10-04 | ||||
| 10 | 1CVJ|1|P | 5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3' | X-RAY CRYSTAL STRUCTURE OF THE POLY(A)-BINDING PROTEIN IN COMPLEX WITH POLYADENYLATE RNA | X-ray diffraction | 2.6 | 1999-10-04 | ||||
| 11 | 1CVJ|1|R | 5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3' | X-RAY CRYSTAL STRUCTURE OF THE POLY(A)-BINDING PROTEIN IN COMPLEX WITH POLYADENYLATE RNA | X-ray diffraction | 2.6 | 1999-10-04 | ||||
| 12 | 1CVJ|1|T | 5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3' | X-RAY CRYSTAL STRUCTURE OF THE POLY(A)-BINDING PROTEIN IN COMPLEX WITH POLYADENYLATE RNA | X-ray diffraction | 2.6 | 1999-10-04 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_99567.1 | NR_all_00350.1 | 4.0 | (1) 1CVJ|1|M | (11) 4JRD|1|B, 4JRD|1|A, 4F02|1|E, 4F02|1|B, 1CVJ|1|T, 1CVJ|1|S, 1CVJ|1|R, 1CVJ|1|Q, 1CVJ|1|P, 1CVJ|1|O, 1CVJ|1|N | (0) |
| NR_4.0_99567.1 | NR_all_23777.1 | 4.0 | (2) 4JRD|1|B, 4JRD|1|A | (10) 1CVJ|1|N, 1CVJ|1|M, 4F02|1|E, 4F02|1|B, 1CVJ|1|T, 1CVJ|1|S, 1CVJ|1|R, 1CVJ|1|Q, 1CVJ|1|P, 1CVJ|1|O | (0) |
| NR_4.0_99567.1 | NR_all_29109.1 | 4.0 | (1) 1CVJ|1|Q | (11) 4JRD|1|B, 4JRD|1|A, 4F02|1|E, 4F02|1|B, 1CVJ|1|T, 1CVJ|1|S, 1CVJ|1|R, 1CVJ|1|P, 1CVJ|1|O, 1CVJ|1|N, 1CVJ|1|M | (0) |
| NR_4.0_99567.1 | NR_all_72174.1 | 4.0 | (6) 1CVJ|1|P, 1CVJ|1|O, 1CVJ|1|N, 1CVJ|1|T, 1CVJ|1|S, 1CVJ|1|R | (6) 1CVJ|1|M, 4JRD|1|B, 4JRD|1|A, 4F02|1|E, 4F02|1|B, 1CVJ|1|Q | (0) |
| NR_4.0_99567.1 | NR_all_80655.1 | 4.0 | (2) 4F02|1|B, 4F02|1|E | (10) 4JRD|1|A, 1CVJ|1|T, 1CVJ|1|S, 1CVJ|1|R, 1CVJ|1|Q, 1CVJ|1|P, 1CVJ|1|O, 1CVJ|1|N, 1CVJ|1|M, 4JRD|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 1CVJ|1|Q | Title: X-RAY CRYSTAL STRUCTURE OF THE POLY(A)-BINDING PROTEIN IN COMPLEX WITH POLYADENYLATE RNA | X-RAY DIFFRACTION | 2.6 | 9 | ||
| 2 | 1CVJ|1|S | Title: X-RAY CRYSTAL STRUCTURE OF THE POLY(A)-BINDING PROTEIN IN COMPLEX WITH POLYADENYLATE RNA | X-RAY DIFFRACTION | 2.6 | 8 | ||
| 3 | 1CVJ|1|P | Title: X-RAY CRYSTAL STRUCTURE OF THE POLY(A)-BINDING PROTEIN IN COMPLEX WITH POLYADENYLATE RNA | X-RAY DIFFRACTION | 2.6 | 7 | ||
| 4 | 1CVJ|1|R | Title: X-RAY CRYSTAL STRUCTURE OF THE POLY(A)-BINDING PROTEIN IN COMPLEX WITH POLYADENYLATE RNA | X-RAY DIFFRACTION | 2.6 | 7 | ||
| 5 | 1CVJ|1|N | Title: X-RAY CRYSTAL STRUCTURE OF THE POLY(A)-BINDING PROTEIN IN COMPLEX WITH POLYADENYLATE RNA | X-RAY DIFFRACTION | 2.6 | 8 | ||
| 6 | 1CVJ|1|O | Title: X-RAY CRYSTAL STRUCTURE OF THE POLY(A)-BINDING PROTEIN IN COMPLEX WITH POLYADENYLATE RNA | X-RAY DIFFRACTION | 2.6 | 8 | ||
| 7 | 1CVJ|1|T | Title: X-RAY CRYSTAL STRUCTURE OF THE POLY(A)-BINDING PROTEIN IN COMPLEX WITH POLYADENYLATE RNA | X-RAY DIFFRACTION | 2.6 | 7 | ||
| 8 | 4F02|1|B | Title: Crystal structure of the PABP-binding site of eIF4G in complex with RRM1-2 of PABP and poly(A) | X-RAY DIFFRACTION | 2 | 9 | ||
| 9 | 4F02|1|E | Title: Crystal structure of the PABP-binding site of eIF4G in complex with RRM1-2 of PABP and poly(A) | X-RAY DIFFRACTION | 2 | 9 | ||
| 10 | 1CVJ|1|M | Title: X-RAY CRYSTAL STRUCTURE OF THE POLY(A)-BINDING PROTEIN IN COMPLEX WITH POLYADENYLATE RNA | X-RAY DIFFRACTION | 2.6 | 9 | ||
| 11 | 4JRD|1|B | Title: Crystal structure of the parallel double-stranded helix of poly(A) RNA | X-RAY DIFFRACTION | 1 | 11 | ||
| 12 | 4JRD|1|A | Title: Crystal structure of the parallel double-stranded helix of poly(A) RNA | X-RAY DIFFRACTION | 1 | 11 |
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