Equivalence class NR_4.0_98642.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4HT9|1|D (rep) | RNA (5'-R(*AP*AP*AP*AP*AP*AP*A)-3') | Homo sapiens | Eukarya | Crystal structure of E coli Hfq bound to two RNAs | X-ray diffraction | 1.8 | 2013-04-17 | ||
| 2 | 4TZ6|1|B | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*A)-3') | Saccharomyces cerevisiae | Eukarya | DEAD-box helicase Mss116 bound to ssRNA and UDP-BeF | X-ray diffraction | 3.21 | 2015-01-28 | ||
| 3 | 4TYW|1|B | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*A)-3') | Saccharomyces cerevisiae | Eukarya | DEAD-box helicase Mss116 bound to ssRNA and ADP-BeF | X-ray diffraction | 2.2 | 2014-12-31 | ||
| 4 | 4TZ0|1|B | RNA (5'-R(*AP*AP*AP*AP*AP*AP*A)-3') | Saccharomyces cerevisiae | Eukarya | DEAD-box helicase Mss116 bound to ssRNA and GDP-BeF | X-ray diffraction | 2.35 | 2014-12-31 | ||
| 5 | 4HT8|1|I | RNA (5'-R(*AP*AP*AP*AP*AP*AP*A)-3') | Homo sapiens | Eukarya | Crystal structure of E coli Hfq bound to poly(A) A7 | X-ray diffraction | 1.9 | 2013-04-17 | ||
| 6 | 4HT8|1|K | RNA (5'-R(*AP*AP*AP*AP*AP*AP*A)-3') | Homo sapiens | Eukarya | Crystal structure of E coli Hfq bound to poly(A) A7 | X-ray diffraction | 1.9 | 2013-04-17 | ||
| 7 | 3QSU|1|P | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*A)-3') | Structure of Staphylococcus aureus Hfq in complex with A7 RNA | X-ray diffraction | 2.2 | 2012-09-12 | ||||
| 8 | 3QSU|1|R | RNA (5'-R(P*AP*AP*AP*AP*AP*AP*A)-3') | Structure of Staphylococcus aureus Hfq in complex with A7 RNA | X-ray diffraction | 2.2 | 2012-09-12 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_98642.1 | NR_all_11746.1 | 4.0 | (1) 4TZ6|1|B | (7) 4HT9|1|D, 4HT8|1|K, 4HT8|1|I, 3QSU|1|R, 3QSU|1|P, 4TZ0|1|B, 4TYW|1|B | (0) |
| NR_4.0_98642.1 | NR_all_13963.1 | 4.0 | (2) 3QSU|1|R, 3QSU|1|P | (6) 4TZ6|1|B, 4TZ0|1|B, 4TYW|1|B, 4HT9|1|D, 4HT8|1|K, 4HT8|1|I | (0) |
| NR_4.0_98642.1 | NR_all_49500.1 | 4.0 | (1) 4TYW|1|B | (7) 4TZ6|1|B, 4TZ0|1|B, 4HT9|1|D, 4HT8|1|K, 4HT8|1|I, 3QSU|1|R, 3QSU|1|P | (0) |
| NR_4.0_98642.1 | NR_all_90271.1 | 4.0 | (1) 4TZ0|1|B | (7) 4TZ6|1|B, 4TYW|1|B, 4HT9|1|D, 4HT8|1|K, 4HT8|1|I, 3QSU|1|R, 3QSU|1|P | (0) |
| NR_4.0_98642.1 | NR_all_97538.1 | 4.0 | (3) 4HT8|1|I, 4HT9|1|D, 4HT8|1|K | (5) 4TZ0|1|B, 4TYW|1|B, 3QSU|1|R, 3QSU|1|P, 4TZ6|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4TYW|1|B | Title: DEAD-box helicase Mss116 bound to ssRNA and ADP-BeF | X-RAY DIFFRACTION | 2.2 | 7 | ||
| 2 | 4TZ0|1|B | Title: DEAD-box helicase Mss116 bound to ssRNA and GDP-BeF | X-RAY DIFFRACTION | 2.35 | 7 | ||
| 3 | 4TZ6|1|B | Title: DEAD-box helicase Mss116 bound to ssRNA and UDP-BeF | X-RAY DIFFRACTION | 3.21 | 7 | ||
| 4 | 4HT8|1|K | Title: Crystal structure of E coli Hfq bound to poly(A) A7 | X-RAY DIFFRACTION | 1.9 | 7 | ||
| 5 | 4HT8|1|I | Title: Crystal structure of E coli Hfq bound to poly(A) A7 | X-RAY DIFFRACTION | 1.9 | 7 | ||
| 6 | 4HT9|1|D | Title: Crystal structure of E coli Hfq bound to two RNAs | X-RAY DIFFRACTION | 1.8 | 7 | ||
| 7 | 3QSU|1|P | Title: Structure of Staphylococcus aureus Hfq in complex with A7 RNA | X-RAY DIFFRACTION | 2.2 | 4 | ||
| 8 | 3QSU|1|R | Title: Structure of Staphylococcus aureus Hfq in complex with A7 RNA | X-RAY DIFFRACTION | 2.2 | 4 |
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