Equivalence class NR_4.0_97835.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4RKV|1|A (rep) | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 0.88 | 2014-11-19 | ||
| 2 | 4RNE|1|A | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 | ||
| 3 | 4RNE|1|F | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 | ||
| 4 | 4XK0|1|A | RNA (5'-(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Crystal structure of a tetramolecular RNA G-quadruplex in potassium | X-ray diffraction | 1.08 | 2015-02-11 | ||
| 5 | 4RJ1|1|A | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 0.92 | 2014-11-12 | ||
| 6 | 1J8G|1|A | 5'-R(*UP*GP*GP*GP*GP*U)-3' | X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-ray diffraction | 0.61 | 2001-11-23 | ||||
| 7 | 4RKV|1|B | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 0.88 | 2014-11-19 | ||
| 8 | 4RJ1|1|B | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 0.92 | 2014-11-12 | ||
| 9 | 1J8G|1|B | 5'-R(*UP*GP*GP*GP*GP*U)-3' | X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-ray diffraction | 0.61 | 2001-11-23 | ||||
| 10 | 4RNE|1|B | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 | ||
| 11 | 4XK0|1|C | RNA (5'-(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Crystal structure of a tetramolecular RNA G-quadruplex in potassium | X-ray diffraction | 1.08 | 2015-02-11 | ||
| 12 | 1J8G|1|C | 5'-R(*UP*GP*GP*GP*GP*U)-3' | X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-ray diffraction | 0.61 | 2001-11-23 | ||||
| 13 | 4RNE|1|C | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 | ||
| 14 | 1J8G|1|D | 5'-R(*UP*GP*GP*GP*GP*U)-3' | X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-ray diffraction | 0.61 | 2001-11-23 | ||||
| 15 | 4RNE|1|D | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 | ||
| 16 | 4RNE|1|E | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 | ||
| 17 | 4RNE|1|G | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 | ||
| 18 | 4RNE|1|H | RNA (5'-R(*UP*GP*GP*GP*GP*U)-3') | synthetic construct | Synthetic | Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-ray diffraction | 1.01 | 2014-11-19 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_97835.1 | NR_all_43822.1 | 3.0 | (13) 4RNE|1|F, 4RKV|1|A, 4RNE|1|H, 4RNE|1|A, 1J8G|1|C, 4RNE|1|C, 4RNE|1|E, 4RJ1|1|A, 4RNE|1|G, 1J8G|1|A, 4RNE|1|B, 4RNE|1|D, 1J8G|1|D | (5) 4RKV|1|B, 1J8G|1|B, 4RJ1|1|B, 4XK0|1|C, 4XK0|1|A | (0) |
| NR_4.0_97835.1 | NR_all_69595.1 | 3.0 | (2) 4RKV|1|B, 1J8G|1|B | (16) 4RJ1|1|A, 4RNE|1|G, 4RKV|1|A, 4XK0|1|A, 4RNE|1|B, 1J8G|1|A, 4RNE|1|D, 1J8G|1|D, 4RNE|1|F, 4RJ1|1|B, 4RNE|1|H, 4RNE|1|A, 4XK0|1|C, 4RNE|1|C, 1J8G|1|C, 4RNE|1|E | (0) |
| NR_4.0_97835.1 | NR_all_87873.1 | 3.0 | (1) 4RJ1|1|B | (17) 4RKV|1|A, 4RNE|1|H, 1J8G|1|A, 4RNE|1|C, 4RJ1|1|A, 4RNE|1|G, 4RNE|1|B, 1J8G|1|D, 4RNE|1|F, 4RNE|1|A, 4XK0|1|C, 1J8G|1|C, 4RNE|1|E, 4RKV|1|B, 4XK0|1|A, 1J8G|1|B, 4RNE|1|D | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4XK0|1|C | Title: Crystal structure of a tetramolecular RNA G-quadruplex in potassium | X-RAY DIFFRACTION | 1.08 | 6 | ||
| 2 | 4RJ1|1|B | Title: Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 0.92 | 6 | ||
| 3 | 4RNE|1|A | Title: Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 9 | ||
| 4 | 4RNE|1|C | Title: Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 6 | ||
| 5 | 4RKV|1|A | Title: Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 0.88 | 10 | ||
| 6 | 4RNE|1|D | Title: Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 6 | ||
| 7 | 4RNE|1|B | Title: Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 6 | ||
| 8 | 1J8G|1|A | Title: X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-RAY DIFFRACTION | 0.61 | 6 | ||
| 9 | 4RNE|1|G | Title: Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 6 | ||
| 10 | 4RNE|1|H | Title: Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 6 | ||
| 11 | 4RNE|1|E | Title: Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 6 | ||
| 12 | 1J8G|1|C | Title: X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-RAY DIFFRACTION | 0.61 | 6 | ||
| 13 | 4RJ1|1|A | Title: Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 0.92 | 6 | ||
| 14 | 1J8G|1|D | Title: X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-RAY DIFFRACTION | 0.61 | 6 | ||
| 15 | 4RNE|1|F | Title: Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 1.01 | 9 | ||
| 16 | 4RKV|1|B | Title: Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions | X-RAY DIFFRACTION | 0.88 | 6 | ||
| 17 | 1J8G|1|B | Title: X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution | X-RAY DIFFRACTION | 0.61 | 6 | ||
| 18 | 4XK0|1|A | Title: Crystal structure of a tetramolecular RNA G-quadruplex in potassium | X-RAY DIFFRACTION | 1.08 | 6 |
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