Equivalence class NR_4.0_95244.1 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6C8O|1|A+ 6C8O|1|B (rep) | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA-activated 2-AIpG monomer, 3h soaking | X-ray diffraction | 1.85 | 2018-05-30 | ||
| 2 | 5V0H|1|A+ 5V0H|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA duplex with 2-MeImpG analogue bound-one binding site | X-ray diffraction | 1.9 | 2017-03-08 | ||
| 3 | 6C8N|1|A+ 6C8N|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA-activated 2-AIpG monomer complex, 2h soaking | X-ray diffraction | 1.9 | 2018-05-30 | ||
| 4 | 6C8M|1|A+ 6C8M|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3'), RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*G)-3') | synthetic construct | Synthetic | RNA-activated 2-AIpG monomer, 1.5h soaking | X-ray diffraction | 2.4 | 2018-05-30 | ||
| 5 | 5L00|1|A+ 5L00|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | Self-complimentary RNA 15mer binding with GMP monomers | X-ray diffraction | 1.25 | 2016-12-07 | ||
| 6 | 5L00|1|C+ 5L00|1|D | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | Self-complimentary RNA 15mer binding with GMP monomers | X-ray diffraction | 1.25 | 2016-12-07 | ||
| 7 | 5KRG|1|C+ 5KRG|1|D | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA 15mer duplex binding with PZG monomer | X-ray diffraction | 1.6 | 2016-12-07 | ||
| 8 | 5KRG|1|A+ 5KRG|1|B | RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*GP*G)-3') | synthetic construct | Synthetic | RNA 15mer duplex binding with PZG monomer | X-ray diffraction | 1.6 | 2016-12-07 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_95244.1 | NR_4.0_26442.1 | 9.15 | (5) 5V0H|1|A+5V0H|1|B, 5L00|1|C+5L00|1|D, 5L00|1|A+5L00|1|B, 5KRG|1|C+5KRG|1|D, 5KRG|1|A+5KRG|1|B | (3) 6C8O|1|A+6C8O|1|B, 6C8N|1|A+6C8N|1|B, 6C8M|1|A+6C8M|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 6C8M|1|A+6C8M|1|B | Title: RNA-activated 2-AIpG monomer, 1.5h soaking | X-RAY DIFFRACTION | 2.4 | 11 | ||
| 2 | 6C8N|1|A+6C8N|1|B | Title: RNA-activated 2-AIpG monomer complex, 2h soaking | X-RAY DIFFRACTION | 1.9 | 11 | ||
| 3 | 6C8O|1|A+6C8O|1|B | Title: RNA-activated 2-AIpG monomer, 3h soaking | X-RAY DIFFRACTION | 1.85 | 11 | ||
| 4 | 5L00|1|A+5L00|1|B | Title: Self-complimentary RNA 15mer binding with GMP monomers | X-RAY DIFFRACTION | 1.25 | 13 | ||
| 5 | 5L00|1|C+5L00|1|D | Title: Self-complimentary RNA 15mer binding with GMP monomers | X-RAY DIFFRACTION | 1.25 | 13 | ||
| 6 | 5KRG|1|A+5KRG|1|B | Title: RNA 15mer duplex binding with PZG monomer | X-RAY DIFFRACTION | 1.6 | 11 | ||
| 7 | 5KRG|1|C+5KRG|1|D | Title: RNA 15mer duplex binding with PZG monomer | X-RAY DIFFRACTION | 1.6 | 11 | ||
| 8 | 5V0H|1|A+5V0H|1|B | Title: RNA duplex with 2-MeImpG analogue bound-one binding site | X-RAY DIFFRACTION | 1.9 | 11 |
Coloring options: