NR_4.0_94059.6

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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	5TBW\|1\|AS (rep)	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-ray diffraction	3	2017-07-26
2	5TBW\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-ray diffraction	3	2017-07-26
3	4V88\|1\|A3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	2014-07-09
4	4V88\|1\|A7	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	The structure of the eukaryotic ribosome at 3.0 A resolution.	X-ray diffraction	3	2014-07-09
5	5I4L\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-ray diffraction	3.1	2016-06-22
6	5MEI\|1\|AS	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Agelastatin A bound to the 80S ribosome	X-ray diffraction	3.5	2017-06-28
7	5ON6\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of haemanthamine bound to the 80S ribosome	X-ray diffraction	3.1	2018-02-28
8	5MEI\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Agelastatin A bound to the 80S ribosome	X-ray diffraction	3.5	2017-06-28
9	5ON6\|1\|AS	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of haemanthamine bound to the 80S ribosome	X-ray diffraction	3.1	2018-02-28
10	5OBM\|1\|7	5S ribosomal RNA	5S Ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-ray diffraction	3.4	2017-12-13
11	5LYB\|1\|7	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-ray diffraction	3.25	2016-11-23
12	5I4L\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-ray diffraction	3.1	2016-06-22
13	5LYB\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-ray diffraction	3.25	2016-11-23
14	5OBM\|1\|3	5S ribosomal RNA	5S Ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-ray diffraction	3.4	2017-12-13
15	5NDW\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome	X-ray diffraction	3.7	2017-12-13
16	5NDW\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome	X-ray diffraction	3.7	2017-12-13
17	5NDV\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-ray diffraction	3.3	2017-12-13
18	5NDV\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-ray diffraction	3.3	2017-12-13
19	5FCJ\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome	X-ray diffraction	3.1	2016-05-11
20	5FCJ\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome	X-ray diffraction	3.1	2016-05-11
21	5NDG\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome	X-ray diffraction	3.7	2017-12-13
22	5FCI\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the vacant uL3 W255C mutant 80S yeast ribosome	X-ray diffraction	3.4	2016-05-11
23	5FCI\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the vacant uL3 W255C mutant 80S yeast ribosome	X-ray diffraction	3.4	2016-05-11
24	5NDG\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome	X-ray diffraction	3.7	2017-12-13
25	5TGM\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.5	2017-01-18
26	5TGM\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.5	2017-01-18
27	4V7R\|1\|B2	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 80S ribosome.	X-ray diffraction	4	2014-07-09
28	4V7R\|1\|D2	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 80S ribosome.	X-ray diffraction	4	2014-07-09
29	5DAT\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-ray diffraction	3.15	2016-08-31
30	5DGV\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.1	2016-12-14
31	5DGF\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.3	2016-12-14
32	5DAT\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-ray diffraction	3.15	2016-08-31
33	5DGV\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.1	2016-12-14
34	5DGE\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-ray diffraction	3.45	2017-01-25
35	5TGA\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.3	2016-11-23
36	5DC3\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with non-modified eIF5A	X-ray diffraction	3.25	2016-06-01
37	5DGE\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-ray diffraction	3.45	2017-01-25
38	5DC3\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with non-modified eIF5A	X-ray diffraction	3.25	2016-06-01
39	5TGA\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-ray diffraction	3.3	2016-11-23
40	5DGF\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-ray diffraction	3.3	2016-12-14
41	4U4R\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	2014-10-22
42	4U3U\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	2014-10-22
43	4U4R\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-ray diffraction	2.8	2014-10-22
44	4U3U\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-ray diffraction	2.9	2014-10-22
45	4U4Q\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
46	4U4Q\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
47	4U3M\|1\|7	5S ribosomal RNA	5.8s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
48	4U52\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
49	4U3M\|1\|3	5S ribosomal RNA	5.8s rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
50	4U4U\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
51	4U6F\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
52	4U52\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
53	4U4U\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Lycorine bound to the yeast 80S ribosome	X-ray diffraction	3	2014-10-22
54	4U4N\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
55	4U6F\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
56	3JCT\|1\|3	5S ribosomal RNA	RDN5-2 rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-em structure of eukaryotic pre-60S ribosomal subunits	Electron microscopy	3.08	2016-06-01
57	4U3N\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
58	4U4Z\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
59	4U4N\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Edeine bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
60	4U4Z\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-ray diffraction	3.1	2014-10-22
61	4U55\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
62	4U50\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
63	5T62\|1\|B	5S ribosomal RNA	5S Ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex	Electron microscopy	3.3	2017-02-08
64	5M1J\|1\|34	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Nonstop ribosomal complex bound with Dom34 and Hbs1	Electron microscopy	3.3	2017-01-18
65	4U50\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
66	4U3N\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
67	4U4Y\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
68	4U4Y\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
69	4U51\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
70	4U55\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
71	5H4P\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1	Electron microscopy	3.07	2017-01-25
72	4U53\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	2014-10-22
73	5APO\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1	Electron microscopy	3.41	2015-12-16
74	4U51\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-ray diffraction	3.2	2014-10-22
75	4U53\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-ray diffraction	3.3	2014-10-22
76	5JUP\|1\|D	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)	Electron microscopy	3.5	2016-10-05
77	4U56\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	2014-10-22
78	4U56\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-ray diffraction	3.45	2014-10-22
79	6GQB\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)	Electron microscopy	3.9	2018-07-11
80	5MC6\|1\|BR	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae	Electron microscopy	3.8	2017-01-18
81	5JUT\|1\|D	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)	Electron microscopy	4	2016-10-05
82	6FT6\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors	Electron microscopy	3.9	2018-03-28
83	5JUO\|1\|D	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)	Electron microscopy	4	2016-10-05
84	5JUU\|1\|D	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)	Electron microscopy	4	2016-10-05
85	6GQV\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)	Electron microscopy	4	2018-07-11
86	5APN\|1\|7	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1	Electron microscopy	3.91	2015-12-16
87	4U4O\|1\|7	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-ray diffraction	3.6	2014-10-22
88	4U4O\|1\|3	5S ribosomal RNA	5S ribosomal RNA	Saccharomyces cerevisiae	Eukarya	RF00001	Crystal structure of Geneticin bound to the yeast 80S ribosome	X-ray diffraction	3.6	2014-10-22
89	5GAK\|1\|3	5S ribosomal RNA	5S rRNA	Saccharomyces cerevisiae	Eukarya	RF00001	Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A	Electron microscopy	3.88	2016-02-24

Release history

Release	9.15
Date	2018-11-09

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_4.0_94059.6	NR_4.0_94059.5	9.15	(87) 4U4Z\|1\|3, 5MEI\|1\|3, 4V7R\|1\|B2, 5TGA\|1\|7, 5TGM\|1\|3, 4U3N\|1\|3, 5FCI\|1\|3, 4U4Y\|1\|7, 5MC6\|1\|BR, 4U6F\|1\|7, 5TGA\|1\|3, 4U3M\|1\|7, 5DGV\|1\|7, 4U4Y\|1\|3, 5M1J\|1\|34, 4U6F\|1\|3, 5TBW\|1\|AS, 4U3M\|1\|3, 5DGV\|1\|3, 4U4U\|1\|7, 5LYB\|1\|7, 4U56\|1\|7, 5TBW\|1\|3, 3JCT\|1\|3, 5DGF\|1\|7, 4U4U\|1\|3, 5LYB\|1\|3, 4U56\|1\|3, 5T62\|1\|B, 5DGF\|1\|3, 4U4R\|1\|7, 5JUU\|1\|D, 4U55\|1\|7, 5ON6\|1\|AS, 5DGE\|1\|7, 4U4R\|1\|3, 5JUT\|1\|D, 4U55\|1\|3, 5ON6\|1\|3, 5DGE\|1\|3, 4U4Q\|1\|7, 5JUP\|1\|D, 4U53\|1\|7, 5OBM\|1\|7, 5DC3\|1\|7, 4U4Q\|1\|3, 5JUO\|1\|D, 4U53\|1\|3, 5OBM\|1\|3, 5DC3\|1\|3, 4U4O\|1\|7, 5I4L\|1\|7, 4U52\|1\|7, 5NDW\|1\|7, 5DAT\|1\|7, 5I4L\|1\|3, 4U52\|1\|3, 5NDW\|1\|3, 5DAT\|1\|3, 4U4O\|1\|3, 5H4P\|1\|3, 4U51\|1\|7, 5NDV\|1\|7, 5APO\|1\|7, 4U4N\|1\|7, 5GAK\|1\|3, 4U51\|1\|3, 5NDV\|1\|3, 5APN\|1\|7, 4U4N\|1\|3, 5FCJ\|1\|7, 4U50\|1\|7, 5NDG\|1\|7, 4V88\|1\|A7, 4U3U\|1\|7, 5FCJ\|1\|3, 4U50\|1\|3, 5NDG\|1\|3, 4V88\|1\|A3, 6FT6\|1\|3, 4U3U\|1\|3, 4U4Z\|1\|7, 5MEI\|1\|AS, 4V7R\|1\|D2, 5TGM\|1\|7, 4U3N\|1\|7, 5FCI\|1\|7	(2) 6GQB\|1\|3, 6GQV\|1\|3	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_4.0_94059.6	NR_4.0_94059.7	9.16	(85) 4U4Z\|1\|3, 5NDV\|1\|7, 5DGF\|1\|3, 4U51\|1\|3, 5OBM\|1\|7, 5DGF\|1\|7, 4U53\|1\|3, 5TBW\|1\|3, 4U3N\|1\|3, 5H4P\|1\|3, 4U56\|1\|3, 5TGM\|1\|3, 4U4N\|1\|3, 5JUP\|1\|D, 4V7R\|1\|B2, 6GQV\|1\|3, 4U4Q\|1\|3, 5LYB\|1\|7, 5APN\|1\|7, 4U4U\|1\|3, 5MEI\|1\|AS, 5DC3\|1\|3, 5DGE\|1\|3, 4U50\|1\|3, 5OBM\|1\|3, 4U52\|1\|3, 5T62\|1\|B, 4U3M\|1\|3, 5GAK\|1\|3, 4U55\|1\|3, 5TGA\|1\|7, 4U3U\|1\|3, 5JUO\|1\|D, 4U6F\|1\|3, 6GQB\|1\|3, 4U4O\|1\|3, 5LYB\|1\|3, 4V88\|1\|A3, 4U4R\|1\|3, 5MEI\|1\|3, 5DAT\|1\|3, 4U4Y\|1\|3, 5NDV\|1\|3, 5NDW\|1\|3, 5ON6\|1\|3, 5DGV\|1\|3, 5TBW\|1\|AS, 5I4L\|1\|3, 5TGM\|1\|7, 5JUT\|1\|D, 5M1J\|1\|34, 5NDG\|1\|3, 5DC3\|1\|7, 4U4Z\|1\|7, 4U51\|1\|7, 3JCT\|1\|3, 4U53\|1\|7, 4U3N\|1\|7, 4U56\|1\|7, 4U4N\|1\|7, 4V7R\|1\|D2, 4U4Q\|1\|7, 5APO\|1\|7, 4U4U\|1\|7, 5DGE\|1\|7, 4U50\|1\|7, 4U52\|1\|7, 4U3M\|1\|7, 4U55\|1\|7, 4U3U\|1\|7, 4U6F\|1\|7, 4U4O\|1\|7, 4V88\|1\|A7, 4U4R\|1\|7, 5DAT\|1\|7, 4U4Y\|1\|7, 5NDW\|1\|7, 5ON6\|1\|AS, 5DGV\|1\|7, 5TGA\|1\|3, 5I4L\|1\|7, 6FT6\|1\|3, 5JUU\|1\|D, 5MC6\|1\|BR, 5NDG\|1\|7	(4) 5FCI\|1\|3, 5FCJ\|1\|7, 5FCI\|1\|7, 5FCJ\|1\|3	(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	5JUO\|1\|D	Title: Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)	ELECTRON MICROSCOPY	4	121
2	5JUT\|1\|D	Title: Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)	ELECTRON MICROSCOPY	4	121
3	5JUU\|1\|D	Title: Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)	ELECTRON MICROSCOPY	4	121
4	5JUP\|1\|D	Title: Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)	ELECTRON MICROSCOPY	3.5	121
5	5GAK\|1\|3	Title: Yeast 60S ribosomal subunit with A-site tRNA, P-site tRNA and eIF-5A	ELECTRON MICROSCOPY	3.88	121
6	5MC6\|1\|BR	Title: Cryo-EM structure of a native ribosome-Ski2-Ski3-Ski8 complex from S. cerevisiae	ELECTRON MICROSCOPY	3.8	121
7	4U4O\|1\|7	Title: Crystal structure of Geneticin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.6	121
8	5TGM\|1\|7	Title: Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.5	121
9	5DAT\|1\|7	Title: Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-RAY DIFFRACTION	3.15	121
10	4U52\|1\|7	Title: Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
11	4U6F\|1\|7	Title: Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
12	5DGV\|1\|7	Title: Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.1	121
13	5DGF\|1\|7	Title: Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.3	121
14	5DGE\|1\|7	Title: Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-RAY DIFFRACTION	3.45	121
15	5DC3\|1\|7	Title: Complex of yeast 80S ribosome with non-modified eIF5A	X-RAY DIFFRACTION	3.25	121
16	4U56\|1\|7	Title: Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.45	121
17	4U50\|1\|7	Title: Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
18	4U51\|1\|7	Title: Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
19	4U53\|1\|7	Title: Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	121
20	4U4U\|1\|7	Title: Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
21	4U4Q\|1\|7	Title: Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
22	4U4N\|1\|7	Title: Crystal structure of Edeine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
23	4U4Z\|1\|7	Title: Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
24	4U3N\|1\|7	Title: Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
25	4U55\|1\|7	Title: Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
26	4U4Y\|1\|7	Title: Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
27	4U3M\|1\|7	Title: Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
28	4U4R\|1\|7	Title: Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	121
29	4U3U\|1\|7	Title: Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	121
30	4V88\|1\|A7	Title: The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	121
31	5I4L\|1\|7	Title: Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
32	5LYB\|1\|7	Title: Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-RAY DIFFRACTION	3.25	121
33	5TGA\|1\|7	Title: Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.3	121
34	5FCJ\|1\|7	Title: Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome	X-RAY DIFFRACTION	3.1	121
35	5FCI\|1\|7	Title: Structure of the vacant uL3 W255C mutant 80S yeast ribosome	X-RAY DIFFRACTION	3.4	121
36	5MEI\|1\|AS	Title: Crystal structure of Agelastatin A bound to the 80S ribosome	X-RAY DIFFRACTION	3.5	121
37	5ON6\|1\|AS	Title: Crystal structure of haemanthamine bound to the 80S ribosome	X-RAY DIFFRACTION	3.1	121
38	5TBW\|1\|AS	Title: Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
39	5APN\|1\|7	Title: Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1	ELECTRON MICROSCOPY	3.91	121
40	5APO\|1\|7	Title: Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and C-terminally tagged Rei1	ELECTRON MICROSCOPY	3.41	121
41	5NDW\|1\|7	Title: Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.7	121
42	5NDG\|1\|7	Title: Crystal structure of geneticin (G418) bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.7	121
43	5NDV\|1\|7	Title: Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	121
44	5NDV\|1\|3	Title: Crystal structure of Paromomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	121
45	4U4O\|1\|3	Title: Crystal structure of Geneticin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.6	121
46	5MEI\|1\|3	Title: Crystal structure of Agelastatin A bound to the 80S ribosome	X-RAY DIFFRACTION	3.5	121
47	4U50\|1\|3	Title: Crystal structure of Verrucarin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
48	4U53\|1\|3	Title: Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.3	121
49	4U51\|1\|3	Title: Crystal structure of Narciclasine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
50	4U55\|1\|3	Title: Crystal structure of Cryptopleurine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
51	4U4N\|1\|3	Title: Crystal structure of Edeine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
52	4U4Z\|1\|3	Title: Crystal structure of Phyllanthoside bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
53	4U6F\|1\|3	Title: Crystal structure of T-2 toxin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
54	4U52\|1\|3	Title: Crystal structure of Nagilactone C bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
55	5ON6\|1\|3	Title: Crystal structure of haemanthamine bound to the 80S ribosome	X-RAY DIFFRACTION	3.1	121
56	4U3N\|1\|3	Title: Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
57	4U4Q\|1\|3	Title: Crystal structure of Homoharringtonine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
58	4U4U\|1\|3	Title: Crystal structure of Lycorine bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
59	4U3M\|1\|3	Title: Crystal structure of Anisomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
60	4U3U\|1\|3	Title: Crystal structure of Cycloheximide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.9	121
61	4U4R\|1\|3	Title: Crystal structure of Lactimidomycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	2.8	121
62	4V88\|1\|A3	Title: The structure of the eukaryotic ribosome at 3.0 A resolution.	X-RAY DIFFRACTION	3	121
63	5TBW\|1\|3	Title: Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3	121
64	4U4Y\|1\|3	Title: Crystal structure of Pactamycin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.2	121
65	5I4L\|1\|3	Title: Crystal structure of Amicoumacin A bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.1	121
66	5FCJ\|1\|3	Title: Structure of the anisomycin-containing uL3 W255C mutant 80S yeast ribosome	X-RAY DIFFRACTION	3.1	121
67	5TGA\|1\|3	Title: Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.3	121
68	5LYB\|1\|3	Title: Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCPmn	X-RAY DIFFRACTION	3.25	121
69	5DGV\|1\|3	Title: Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.1	121
70	5DAT\|1\|3	Title: Complex of yeast 80S ribosome with hypusine-containing eIF5A	X-RAY DIFFRACTION	3.15	121
71	4U56\|1\|3	Title: Crystal structure of Blasticidin S bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.45	121
72	5FCI\|1\|3	Title: Structure of the vacant uL3 W255C mutant 80S yeast ribosome	X-RAY DIFFRACTION	3.4	121
73	5NDW\|1\|3	Title: Crystal structure of aminoglycoside TC007 bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.7	121
74	5NDG\|1\|3	Title: Crystal structure of geneticin (G418) bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.7	121
75	5DGE\|1\|3	Title: Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome	X-RAY DIFFRACTION	3.45	121
76	5DC3\|1\|3	Title: Complex of yeast 80S ribosome with non-modified eIF5A	X-RAY DIFFRACTION	3.25	121
77	5DGF\|1\|3	Title: Complex of yeast 80S ribosome with hypusine-containing/non-modified eIF5A and/or a peptidyl-tRNA analog	X-RAY DIFFRACTION	3.3	121
78	5TGM\|1\|3	Title: Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro	X-RAY DIFFRACTION	3.5	121
79	5OBM\|1\|3	Title: Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.4	121
80	5OBM\|1\|7	Title: Crystal structure of Gentamicin bound to the yeast 80S ribosome	X-RAY DIFFRACTION	3.4	121
81	5M1J\|1\|34	Title: Nonstop ribosomal complex bound with Dom34 and Hbs1	ELECTRON MICROSCOPY	3.3	121
82	3JCT\|1\|3	Title: Cryo-em structure of eukaryotic pre-60S ribosomal subunits	ELECTRON MICROSCOPY	3.08	121
83	5H4P\|1\|3	Title: Structural snapshot of cytoplasmic pre-60S ribosomal particles bound with Nmd3, Lsg1, Tif6 and Reh1	ELECTRON MICROSCOPY	3.07	121
84	6GQV\|1\|3	Title: Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)	ELECTRON MICROSCOPY	4	121
85	6GQB\|1\|3	Title: Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)	ELECTRON MICROSCOPY	3.9	121
86	5T62\|1\|B	Title: Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex	ELECTRON MICROSCOPY	3.3	121
87	6FT6\|1\|3	Title: Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors	ELECTRON MICROSCOPY	3.9	121
88	4V7R\|1\|B2	Title: Yeast 80S ribosome.	X-RAY DIFFRACTION	4	121
89	4V7R\|1\|D2	Title: Yeast 80S ribosome.	X-RAY DIFFRACTION	4	121

Coloring options: Nucleotide numbers

Equivalence class NR_4.0_94059.6 Obsolete

Release history

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