Equivalence class NR_4.0_93399.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 5DM6|1|X (rep) | Large subunit ribosomal RNA | 23S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF02541 | Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans | X-ray diffraction | 2.9 | 2015-11-11 |
| 2 | 1NJP|1|0 | Large subunit ribosomal RNA | 23S ribosomal RNA | Deinococcus radiodurans | Bacteria | RF02541 | The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) | X-ray diffraction | 3.5 | 2003-02-11 |
Release history
| Release | 6.0 |
|---|---|
| Date | 2017-04-04 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_93399.1 | NR_4.0_08124.2 | 6.0 | (2) 5DM6|1|X, 1NJP|1|0 | (0) | (40) 4IO9|1|X, 1NWY|1|0, 1JZY|1|A, 1NJM|1|0, 4U67|1|X, 3DLL|1|X, 1J5A|1|A, 3PIO|1|X, 2OGO|1|0, 2ZJR|1|X, 2O43|1|A, 2OGM|1|0, 1XBP|1|0, 2AAR|1|0, 1NWX|1|0, 4IOC|1|X, 1P9X|1|0, 1K01|1|A, 1NJO|1|0, 5DM7|1|X, 3JQ4|1|A, 2ZJQ|1|X, 2O45|1|A, 1Z58|1|2, 1OND|1|0, 4WFN|1|X, 1NJN|1|0, 3PIP|1|X, 1JZX|1|A, 3CF5|1|X, 2OGN|1|0, 2D3O|1|0, 1SM1|1|0, 1NKW|1|0, 4IOA|1|X, 1JZZ|1|A, 3FWO|1|A, 2ZJP|1|X, 2O44|1|A, 1Y69|1|0 |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_93399.1 | NR_4.0_17165.1 | 7.0 | (2) 5DM6|1|X, 1NJP|1|0 | (0) | (40) 3DLL|1|X, 1NJM|1|0, 2O45|1|A, 4U67|1|X, 1SM1|1|0, 3CF5|1|X, 1K01|1|A, 2O44|1|A, 4IOC|1|X, 1P9X|1|0, 2ZJR|1|X, 1JZZ|1|A, 2O43|1|A, 4IOA|1|X, 1OND|1|0, 2ZJQ|1|X, 1JZY|1|A, 2D3O|1|0, 4IO9|1|X, 1NWY|1|0, 2ZJP|1|X, 1JZX|1|A, 2AAR|1|0, 3PIP|1|X, 1NWX|1|0, 1J5A|1|A, 1Z58|1|2, 3PIO|1|X, 1NKW|1|0, 2OGO|1|0, 5DM7|1|X, 1Y69|1|0, 3JQ4|1|A, 1NJO|1|0, 2OGN|1|0, 4WFN|1|X, 1XBP|1|0, 3FWO|1|A, 1NJN|1|0, 2OGM|1|0 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5DM6|1|X | Title: Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans | X-RAY DIFFRACTION | 2.9 | 2780 | ||
| 2 | 1NJP|1|0 | Title: The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) | X-RAY DIFFRACTION | 3.5 | 2766 |
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