NR_4.0_92484.1

Members (77)
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#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	4V8C\|1\|AB (rep)	5S ribosomal RNA	5S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-ray diffraction	3.3	2014-07-09
2	4V8E\|1\|CB	5S ribosomal RNA	5S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).	X-ray diffraction	3.3	2014-07-09
3	4TUE\|1\|YB	5S ribosomal RNA	5S rRNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome	X-ray diffraction	3.5	2015-05-13
4	4TUE\|1\|RB	5S ribosomal RNA	5S rRNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome	X-ray diffraction	3.5	2015-05-13
5	5E81\|1\|16	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-ray diffraction	2.95	2016-01-27
6	4WRO\|1\|16	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site	X-ray diffraction	3.05	2015-06-10
7	4WZD\|1\|16	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Complex of 70S ribosome with cognate tRNA-Tyr in the P-site	X-ray diffraction	3.1	2015-06-10
8	5IB8\|1\|16	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site	X-ray diffraction	3.13	2016-05-25
9	5DOY\|1\|1B	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution	X-ray diffraction	2.6	2015-12-30
10	4TUD\|1\|YB	5S ribosomal RNA	5S rRNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome	X-ray diffraction	3.6	2015-05-13
11	4TUD\|1\|RB	5S ribosomal RNA	5S rRNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome	X-ray diffraction	3.6	2015-05-13
12	5FDU\|1\|1B	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.9	2016-01-27
13	5E81\|1\|1J	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-ray diffraction	2.95	2016-01-27
14	5IBB\|1\|1J	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-ray diffraction	2.96	2016-05-25
15	5EL4\|1\|16	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position	X-ray diffraction	3.15	2016-01-27
16	4V8E\|1\|AB	5S ribosomal RNA	5S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).	X-ray diffraction	3.3	2014-07-09
17	4V8C\|1\|BB	5S ribosomal RNA	5S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-ray diffraction	3.3	2014-07-09
18	4V9I\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon	X-ray diffraction	3.3	2014-07-09
19	4WT8\|1\|Cs	5S ribosomal RNA	5S rRNA (119-MER)	Thermus thermophilus	Bacteria	RF00001	Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex	X-ray diffraction	3.4	2015-01-21
20	5D8B\|1\|WC	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch	X-ray diffraction	3.63	2015-10-14
21	5D8B\|1\|AD	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch	X-ray diffraction	3.63	2015-10-14
22	5EL6\|1\|16	5S ribosomal RNA	5S rRNA	Thermus thermophilus	Bacteria	RF00001	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin	X-ray diffraction	3.1	2016-01-27
23	5E7K\|1\|16	5S ribosomal RNA	5S rRNA	Thermus thermophilus	Bacteria	RF00001	Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site	X-ray diffraction	3.2	2016-01-27
24	4WSM\|1\|16	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites	X-ray diffraction	3.3	2015-06-10
25	5HD1\|1\|1B	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.7	2016-04-06
26	5F8K\|1\|2B	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.8	2016-02-03
27	5FDU\|1\|2B	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.9	2016-01-27
28	4V9I\|1\|DB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon	X-ray diffraction	3.3	2014-07-09
29	4WT8\|1\|Ds	5S ribosomal RNA	5S rRNA (119-MER)	Thermus thermophilus	Bacteria	RF00001	Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex	X-ray diffraction	3.4	2015-01-21
30	4V9Q\|1\|CB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.	X-ray diffraction	3.4	2014-07-09
31	4V9Q\|1\|AB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.	X-ray diffraction	3.4	2014-07-09
32	4WR6\|1\|16	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.	X-ray diffraction	3.05	2015-06-10
33	5EL6\|1\|1J	5S ribosomal RNA	5S rRNA	Thermus thermophilus	Bacteria	RF00001	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin	X-ray diffraction	3.1	2016-01-27
34	4WSM\|1\|1J	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites	X-ray diffraction	3.3	2015-06-10
35	4W4G\|1\|YB	5S ribosomal RNA	5S rRNA	Thermus thermophilus	Bacteria	RF00001	Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon	X-ray diffraction	3.3	2015-10-21
36	5J4B\|1\|1B	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-ray diffraction	2.6	2016-04-27
37	5F8K\|1\|1B	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.8	2016-02-03
38	4V9L\|1\|DB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.	X-ray diffraction	3.5	2014-07-09
39	4V83\|1\|DB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.	X-ray diffraction	3.5	2014-07-09
40	4V83\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.	X-ray diffraction	3.5	2014-07-09
41	4V8U\|1\|DB	5S ribosomal RNA	5S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00001	Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.	X-ray diffraction	3.7	2014-07-09
42	4V8U\|1\|BB	5S ribosomal RNA	5S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00001	Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.	X-ray diffraction	3.7	2014-07-09
43	5IBB\|1\|16	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-ray diffraction	2.96	2016-05-25
44	4YZV\|1\|YB	5S ribosomal RNA	5S rRNA	Thermus thermophilus	Bacteria	RF00001	Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon	X-ray diffraction	3.1	2015-10-21
45	4WZD\|1\|1J	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Complex of 70S ribosome with cognate tRNA-Tyr in the P-site	X-ray diffraction	3.1	2015-06-10
46	5E7K\|1\|1J	5S ribosomal RNA	5S rRNA	Thermus thermophilus	Bacteria	RF00001	Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site	X-ray diffraction	3.2	2016-01-27
47	4V84\|1\|DB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.	X-ray diffraction	3.4	2014-07-09
48	4V7M\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	The structures of Capreomycin bound to the 70S ribosome.	X-ray diffraction	3.45	2014-07-09
49	4V9L\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.	X-ray diffraction	3.5	2014-07-09
50	4WR6\|1\|1J	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.	X-ray diffraction	3.05	2015-06-10
51	4YZV\|1\|RB	5S ribosomal RNA	5S rRNA	Thermus thermophilus	Bacteria	RF00001	Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon	X-ray diffraction	3.1	2015-10-21
52	4V9B\|1\|DB	5S ribosomal RNA	5S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00001	Crystal Structure of the 70S ribosome with tigecycline.	X-ray diffraction	3.1	2014-07-09
53	4V9B\|1\|BB	5S ribosomal RNA	5S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00001	Crystal Structure of the 70S ribosome with tigecycline.	X-ray diffraction	3.1	2014-07-09
54	4W4G\|1\|RB	5S ribosomal RNA	5S rRNA	Thermus thermophilus	Bacteria	RF00001	Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon	X-ray diffraction	3.3	2015-10-21
55	5DOY\|1\|2B	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution	X-ray diffraction	2.6	2015-12-30
56	5HD1\|1\|2B	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome	X-ray diffraction	2.7	2016-04-06
57	4V84\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.	X-ray diffraction	3.4	2014-07-09
58	4YPB\|1\|YB	5S ribosomal RNA	5S rRNA	Thermus thermophilus	Bacteria	RF00001	Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon	X-ray diffraction	3.4	2015-10-21
59	5J4B\|1\|2B	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-ray diffraction	2.6	2016-04-27
60	4V4J\|1\|x	5S ribosomal RNA	5S LARGE SUBUNIT RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00001	Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.	X-ray diffraction	3.83	2014-07-09
61	4V8N\|1\|DB	5S ribosomal RNA	5S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00001	The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.	X-ray diffraction	3.1	2014-07-09
62	4V8N\|1\|BB	5S ribosomal RNA	5S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00001	The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.	X-ray diffraction	3.1	2014-07-09
63	4W29\|1\|BB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.	X-ray diffraction	3.8	2014-10-01
64	4YPB\|1\|RB	5S ribosomal RNA	5S rRNA	Thermus thermophilus	Bacteria	RF00001	Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon	X-ray diffraction	3.4	2015-10-21
65	4V8Q\|1\|AB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome	X-ray diffraction	3.1	2014-07-09
66	4XEJ\|1\|A5S	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	IRES bound to bacterial Ribosome	X-ray diffraction	3.8	2015-02-25
67	5EL4\|1\|1J	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position	X-ray diffraction	3.15	2016-01-27
68	4V5K\|1\|DB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome	X-ray diffraction	3.2	2014-07-09
69	4V5K\|1\|BB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome	X-ray diffraction	3.2	2014-07-09
70	4XEJ\|1\|B5S	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	IRES bound to bacterial Ribosome	X-ray diffraction	3.8	2015-02-25
71	5IB8\|1\|1J	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site	X-ray diffraction	3.13	2016-05-25
72	4V5G\|1\|BB	5S ribosomal RNA	5S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00001	The crystal structure of the 70S ribosome bound to EF-Tu and tRNA	X-ray diffraction	3.6	2014-07-09
73	4WRO\|1\|1J	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site	X-ray diffraction	3.05	2015-06-10
74	4V5G\|1\|DB	5S ribosomal RNA	5S RIBOSOMAL RNA	Thermus thermophilus	Bacteria	RF00001	The crystal structure of the 70S ribosome bound to EF-Tu and tRNA	X-ray diffraction	3.6	2014-07-09
75	4W29\|1\|DB	5S ribosomal RNA	5S Ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.	X-ray diffraction	3.8	2014-10-01
76	5IMQ\|1\|E	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	Structure of ribosome bound to cofactor at 3.8 angstrom resolution	Electron microscopy	3.8	2016-05-18
77	4V7M\|1\|DB	5S ribosomal RNA	5S ribosomal RNA	Thermus thermophilus	Bacteria	RF00001	The structures of Capreomycin bound to the 70S ribosome.	X-ray diffraction	3.45	2014-07-09

Release history

Release	6.0
Date	2017-04-04

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_4.0_92484.1	NR_4.0_87611.1	6.0	(77) 4XEJ\|1\|A5S, 4V4J\|1\|x, 5E7K\|1\|16, 4V9Q\|1\|CB, 4WSM\|1\|1J, 4V8C\|1\|BB, 4YZV\|1\|RB, 5HD1\|1\|1B, 4V9I\|1\|BB, 4W4G\|1\|YB, 4V83\|1\|BB, 4WZD\|1\|1J, 5EL6\|1\|16, 4V8N\|1\|DB, 5IBB\|1\|16, 4V9Q\|1\|AB, 4V5G\|1\|BB, 5E7K\|1\|1J, 4V8C\|1\|AB, 5FDU\|1\|2B, 4V9B\|1\|DB, 4WT8\|1\|Cs, 5D8B\|1\|AD, 4V7M\|1\|DB, 4WR6\|1\|1J, 4XEJ\|1\|B5S, 4TUD\|1\|RB, 4W29\|1\|BB, 4YZV\|1\|YB, 4V9I\|1\|DB, 4WR6\|1\|16, 4V83\|1\|DB, 5EL6\|1\|1J, 4V8Q\|1\|AB, 5IBB\|1\|1J, 4V5G\|1\|DB, 5E81\|1\|16, 5D8B\|1\|WC, 4WRO\|1\|16, 4YPB\|1\|RB, 4TUD\|1\|YB, 4W29\|1\|DB, 4WT8\|1\|Ds, 4V9L\|1\|BB, 4V84\|1\|BB, 5F8K\|1\|1B, 4V8U\|1\|DB, 5IMQ\|1\|E, 4V5K\|1\|DB, 5E81\|1\|1J, 4V8E\|1\|AB, 5HD1\|1\|2B, 4TUE\|1\|RB, 5DOY\|1\|1B, 4V8U\|1\|BB, 4WRO\|1\|1J, 4YPB\|1\|YB, 4V5K\|1\|BB, 4W4G\|1\|RB, 4WZD\|1\|16, 4V9L\|1\|DB, 4V9B\|1\|BB, 5J4B\|1\|1B, 4V7M\|1\|BB, 5EL4\|1\|16, 4V8E\|1\|CB, 5IB8\|1\|16, 4TUE\|1\|YB, 5DOY\|1\|2B, 5F8K\|1\|2B, 4WSM\|1\|16, 5J4B\|1\|2B, 5EL4\|1\|1J, 4V8N\|1\|BB, 5IB8\|1\|1J, 4V84\|1\|DB, 5FDU\|1\|1B	(0)	(189) 4V5F\|1\|DB, 4V5R\|1\|BB, 4LFZ\|1\|RB, 4V5E\|1\|BB, 4L71\|1\|YB, 4V5C\|1\|DB, 5FDV\|1\|1B, 1VY4\|1\|BB, 4L47\|1\|RB, 5EL5\|1\|1J, 1VY6\|1\|DB, 4WQF\|1\|CB, 4Y4P\|1\|1B, 5DOX\|1\|1B, 4W2G\|1\|BB, 4WQ1\|1\|16, 4Z8C\|1\|2B, 4W2E\|1\|B, 4W2I\|1\|DB, 4V8G\|1\|DB, 4V8X\|1\|BB, 4V9R\|1\|DB, 4V8F\|1\|AB, 4V8J\|1\|BB, 4V6A\|1\|BB, 4V7K\|1\|AB, 4V8B\|1\|DB, 4TUC\|1\|RB, 4V63\|1\|DB, 4W2H\|1\|BB, 4V6G\|1\|DB, 4TUA\|1\|YB, 4V5S\|1\|BB, 4P70\|1\|RB, 5J4C\|1\|2B, 4LT8\|1\|YB, 5IB7\|1\|16, 4LSK\|1\|RB, 4WU1\|1\|16, 5EL7\|1\|1J, 4V4I\|1\|x, 5HCQ\|1\|2B, 4WQR\|1\|1J, 4WSD\|1\|1J, 5HCP\|1\|1B, 4WQF\|1\|AB, 4WRA\|1\|16, 4V97\|1\|BB, 4V9K\|1\|DB, 4V90\|1\|BB, 4V9J\|1\|BB, 4V7P\|1\|CB, 4V7Z\|1\|DB, 4V8O\|1\|BB, 4V5F\|1\|BB, 4V7L\|1\|BB, 4WQU\|1\|CB, 4V7Y\|1\|BB, 4V5D\|1\|DB, 4V5P\|1\|BB, 4V7J\|1\|BB, 4L71\|1\|RB, 4V5C\|1\|BB, 1VY7\|1\|DB, 4V51\|1\|DB, 1VY6\|1\|BB, 4TUC\|1\|YB, 4ZER\|1\|2B, 5J4C\|1\|1B, 4V5J\|1\|BB, 1VY4\|1\|DB, 4WZO\|1\|16, 4Z8C\|1\|1B, 1VVJ\|1\|RB, 4W2I\|1\|BB, 4WT1\|1\|1J, 4Y4P\|1\|2B, 4V9R\|1\|BB, 4W2G\|1\|DB, 4Y4O\|1\|1B, 4V9M\|1\|DB, 4W2F\|1\|BB, 4V8B\|1\|BB, 4V8H\|1\|BB, 4V9K\|1\|BB, 4V63\|1\|BB, 4V87\|1\|DB, 4V8F\|1\|DB, 4V5R\|1\|DB, 4V6A\|1\|DB, 4V7Z\|1\|BB, 4P6F\|1\|YB, 4V5Q\|1\|BB, 4V6

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_4.0_92484.1	NR_4.0_59083.1	7.0	(77) 4V7M\|1\|BB, 5EL4\|1\|1J, 5IB8\|1\|16, 4V4J\|1\|x, 4V84\|1\|BB, 5F8K\|1\|2B, 5IBB\|1\|1J, 4V5K\|1\|DB, 4V8E\|1\|AB, 4TUE\|1\|YB, 4V83\|1\|DB, 4V8N\|1\|DB, 4V9L\|1\|DB, 4TUD\|1\|YB, 4V5K\|1\|BB, 4V8C\|1\|AB, 4V9B\|1\|BB, 4W29\|1\|DB, 4V8N\|1\|BB, 4V9L\|1\|BB, 4WR6\|1\|16, 4V8U\|1\|DB, 4V9Q\|1\|CB, 4WSM\|1\|16, 4YPB\|1\|YB, 4V9I\|1\|BB, 4W4G\|1\|YB, 4WZD\|1\|16, 5D8B\|1\|AD, 4WRO\|1\|1J, 4XEJ\|1\|B5S, 5E7K\|1\|16, 4WT8\|1\|Cs, 4YZV\|1\|YB, 5EL4\|1\|16, 5HD1\|1\|1B, 4XEJ\|1\|A5S, 5DOY\|1\|2B, 5EL6\|1\|1J, 5IBB\|1\|16, 5E81\|1\|16, 5FDU\|1\|2B, 5J4B\|1\|2B, 4TUE\|1\|RB, 4V7M\|1\|DB, 5EL6\|1\|16, 5IB8\|1\|1J, 4V5G\|1\|BB, 4V84\|1\|DB, 5FDU\|1\|1B, 5IMQ\|1\|E, 4V8E\|1\|CB, 4V8Q\|1\|AB, 4V9Q\|1\|AB, 4V8C\|1\|BB, 4V9B\|1\|DB, 4W4G\|1\|RB, 4WR6\|1\|1J, 4TUD\|1\|RB, 4W29\|1\|BB, 4WSM\|1\|1J, 4YZV\|1\|RB, 4WZD\|1\|1J, 5D8B\|1\|WC, 4YPB\|1\|RB, 5E7K\|1\|1J, 4WT8\|1\|Ds, 5HD1\|1\|2B, 5F8K\|1\|1B, 5E81\|1\|1J, 4V83\|1\|BB, 4V5G\|1\|DB, 5J4B\|1\|1B, 4V9I\|1\|DB, 4V8U\|1\|BB, 4WRO\|1\|16, 5DOY\|1\|1B	(0)	(189) 4Z3S\|1\|2B, 4V8O\|1\|BB, 4V5E\|1\|BB, 4Y4O\|1\|1B, 4V8H\|1\|DB, 4V5A\|1\|DB, 5EL5\|1\|16, 4V8F\|1\|AB, 4TUC\|1\|YB, 4V8A\|1\|BB, 4TUA\|1\|RB, 4Y4P\|1\|1B, 4V8I\|1\|DB, 4TUB\|1\|YB, 4LT8\|1\|YB, 4WU1\|1\|1J, 4V8G\|1\|BB, 4V51\|1\|BB, 4V8B\|1\|DB, 4TUB\|1\|RB, 4Z3S\|1\|1B, 4P6F\|1\|YB, 4WZO\|1\|1J, 4V8H\|1\|BB, 4V5A\|1\|BB, 4WT1\|1\|16, 4V8D\|1\|DB, 4TUC\|1\|RB, 4Z8C\|1\|1B, 4P70\|1\|YB, 4Y4O\|1\|2B, 4V8I\|1\|BB, 4WU1\|1\|16, 4V8F\|1\|DB, 4V4I\|1\|x, 4ZER\|1\|1B, 4V8B\|1\|BB, 4TUA\|1\|YB, 4Y4P\|1\|2B, 4V8J\|1\|BB, 4WZO\|1\|16, 4V8G\|1\|DB, 4V51\|1\|DB, 4LNT\|1\|YB, 4WSD\|1\|1J, 4V8D\|1\|BB, 4WQY\|1\|AB, 4V87\|1\|DB, 4P70\|1\|RB, 4V7Y\|1\|BB, 4LSK\|1\|YB, 4V7P\|1\|CB, 4LFZ\|1\|RB, 4WRA\|1\|16, 4WQR\|1\|1J, 4V7Z\|1\|BB, 4V7W\|1\|DB, 4LNT\|1\|RB, 4WSD\|1\|16, 4WQF\|1\|CB, 4L71\|1\|YB, 4WQU\|1\|CB, 4V87\|1\|AB, 4V7X\|1\|DB, 4LSK\|1\|RB, 4LEL\|1\|YB, 4WQY\|1\|CB, 4V8A\|1\|AB, 4WQR\|1\|16, 4V7Y\|1\|DB, 4LT8\|1\|RB, 4LFZ\|1\|YB, 4WRA\|1\|1J, 4L71\|1\|RB, 4WQU\|1\|AB, 4V7Z\|1\|DB, 1VY6\|1\|DB, 4WQ1\|1\|1J, 4V7X\|1\|BB, 4W2I\|1\|BB, 4V7L\|1\|DB, 4V7J\|1\|AB, 1VY7\|1\|DB, 4V6A\|1\|DB, 1VY5\|1\|BB, 4WPO\|1\|AB, 4W2G\|1\|DB, 4V7K\|1\|AB, 4L47\|1\|YB, 4V6F\|1\|DB, 1VY6\|1\|BB, 4WQ1\|1\|16, 4W2F\|1\|DB, 1V

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	4W29\|1\|BB	Title: 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.	X-RAY DIFFRACTION	3.8	119
2	4W29\|1\|DB	Title: 70S ribosome translocation intermediate containing elongation factor EFG/GDP/fusidic acid, mRNA, and tRNAs trapped in the AP/AP pe/E chimeric hybrid state.	X-RAY DIFFRACTION	3.8	119
3	4V9L\|1\|DB	Title: 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.	X-RAY DIFFRACTION	3.5	119
4	4V9L\|1\|BB	Title: 70S Ribosome translocation intermediate FA-3.6A containing elongation factor EFG/FUSIDIC ACID/GDP, mRNA, and tRNA bound in the pe*/E state.	X-RAY DIFFRACTION	3.5	119
5	4V7M\|1\|DB	Title: The structures of Capreomycin bound to the 70S ribosome.	X-RAY DIFFRACTION	3.45	119
6	4V7M\|1\|BB	Title: The structures of Capreomycin bound to the 70S ribosome.	X-RAY DIFFRACTION	3.45	119
7	4V8C\|1\|BB	Title: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-RAY DIFFRACTION	3.3	122
8	4V8E\|1\|CB	Title: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).	X-RAY DIFFRACTION	3.3	122
9	5IBB\|1\|1J	Title: Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-RAY DIFFRACTION	2.96	122
10	5E81\|1\|1J	Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-RAY DIFFRACTION	2.95	122
11	5E7K\|1\|1J	Title: Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site	X-RAY DIFFRACTION	3.2	122
12	5EL6\|1\|1J	Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin	X-RAY DIFFRACTION	3.1	122
13	5IB8\|1\|1J	Title: Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site	X-RAY DIFFRACTION	3.13	122
14	5EL4\|1\|1J	Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position	X-RAY DIFFRACTION	3.15	122
15	4WRO\|1\|1J	Title: Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site	X-RAY DIFFRACTION	3.05	122
16	4WSM\|1\|1J	Title: Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites	X-RAY DIFFRACTION	3.3	122
17	4WR6\|1\|1J	Title: Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.	X-RAY DIFFRACTION	3.05	122
18	4V9B\|1\|DB	Title: Crystal Structure of the 70S ribosome with tigecycline.	X-RAY DIFFRACTION	3.1	122
19	4WZD\|1\|1J	Title: Complex of 70S ribosome with cognate tRNA-Tyr in the P-site	X-RAY DIFFRACTION	3.1	122
20	4V9I\|1\|BB	Title: Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon	X-RAY DIFFRACTION	3.3	119
21	4V9I\|1\|DB	Title: Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon	X-RAY DIFFRACTION	3.3	119
22	4WT8\|1\|Cs	Title: Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex	X-RAY DIFFRACTION	3.4	119
23	4WT8\|1\|Ds	Title: Crystal Structure of bactobolin A bound to 70S ribosome-tRNA complex	X-RAY DIFFRACTION	3.4	119
24	4V5K\|1\|BB	Title: Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome	X-RAY DIFFRACTION	3.2	119
25	4V5K\|1\|DB	Title: Structure of cytotoxic domain of colicin E3 bound to the 70S ribosome	X-RAY DIFFRACTION	3.2	119
26	4V8N\|1\|DB	Title: The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.	X-RAY DIFFRACTION	3.1	119
27	4V8N\|1\|BB	Title: The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.	X-RAY DIFFRACTION	3.1	119
28	4V8U\|1\|BB	Title: Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.	X-RAY DIFFRACTION	3.7	119
29	4V8U\|1\|DB	Title: Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.	X-RAY DIFFRACTION	3.7	119
30	4V5G\|1\|DB	Title: The crystal structure of the 70S ribosome bound to EF-Tu and tRNA	X-RAY DIFFRACTION	3.6	119
31	4V5G\|1\|BB	Title: The crystal structure of the 70S ribosome bound to EF-Tu and tRNA	X-RAY DIFFRACTION	3.6	119
32	4V8Q\|1\|AB	Title: Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome	X-RAY DIFFRACTION	3.1	119
33	4YPB\|1\|YB	Title: Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon	X-RAY DIFFRACTION	3.4	122
34	4YZV\|1\|YB	Title: Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon	X-RAY DIFFRACTION	3.1	122
35	4W4G\|1\|YB	Title: Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon	X-RAY DIFFRACTION	3.3	122
36	4TUE\|1\|RB	Title: Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome	X-RAY DIFFRACTION	3.5	120
37	4TUD\|1\|RB	Title: Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome	X-RAY DIFFRACTION	3.6	120
38	4V8E\|1\|AB	Title: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-tyr complex).	X-RAY DIFFRACTION	3.3	122
39	4V8C\|1\|AB	Title: Crystal structure analysis of ribosomal decoding (near-cognate tRNA-leu complex with paromomycin).	X-RAY DIFFRACTION	3.3	122
40	4TUD\|1\|YB	Title: Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome	X-RAY DIFFRACTION	3.6	120
41	4TUE\|1\|YB	Title: Crystal structure of ASL-SufJ bound to Codon ACC-U on the Ribosome	X-RAY DIFFRACTION	3.5	120
42	4WSM\|1\|16	Title: Complex of 70S ribosome with tRNA-Leu and mRNA with G-U mismatch in the first position in the A- and P-sites	X-RAY DIFFRACTION	3.3	122
43	5E7K\|1\|16	Title: Structure of T. thermophilus 70S ribosome complex with mRNA and cognate tRNALys in the A-site	X-RAY DIFFRACTION	3.2	122
44	5IB8\|1\|16	Title: Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNALys with U-G mismatch in the A-site	X-RAY DIFFRACTION	3.13	122
45	5E81\|1\|16	Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with wobble pair	X-RAY DIFFRACTION	2.95	122
46	5IBB\|1\|16	Title: Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAVal in the A-site	X-RAY DIFFRACTION	2.96	122
47	5EL6\|1\|16	Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position and antibiotic paromomycin	X-RAY DIFFRACTION	3.1	122
48	5EL4\|1\|16	Title: Structure of T. thermophilus 70S ribosome complex with mRNA and tRNALys in the A-site with a U-U mismatch in the first position	X-RAY DIFFRACTION	3.15	122
49	4WRO\|1\|16	Title: Complex of 70S ribosome with tRNA-Phe and mRNA with C-A mismatch in the second position in the A-site	X-RAY DIFFRACTION	3.05	122
50	4V9B\|1\|BB	Title: Crystal Structure of the 70S ribosome with tigecycline.	X-RAY DIFFRACTION	3.1	122
51	4WZD\|1\|16	Title: Complex of 70S ribosome with cognate tRNA-Tyr in the P-site	X-RAY DIFFRACTION	3.1	122
52	4WR6\|1\|16	Title: Complex of 70S ribosome with tRNA-Tyr and mRNA with A-A mismatch in the first position in the A-site.	X-RAY DIFFRACTION	3.05	122
53	5DOY\|1\|2B	Title: Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution	X-RAY DIFFRACTION	2.6	120
54	5J4B\|1\|2B	Title: Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-RAY DIFFRACTION	2.6	120
55	5HD1\|1\|2B	Title: Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.7	120
56	5F8K\|1\|2B	Title: Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.8	120
57	5FDU\|1\|2B	Title: Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.9	120
58	5FDU\|1\|1B	Title: Crystal structure of the Metalnikowin I antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.9	121
59	5DOY\|1\|1B	Title: Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic Hygromycin A, mRNA and three tRNAs in the A, P and E sites at 2.6A resolution	X-RAY DIFFRACTION	2.6	120
60	5HD1\|1\|1B	Title: Crystal structure of antimicrobial peptide Pyrrhocoricin bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.7	120
61	5F8K\|1\|1B	Title: Crystal structure of the Bac7(1-16) antimicrobial peptide bound to the Thermus thermophilus 70S ribosome	X-RAY DIFFRACTION	2.8	120
62	5J4B\|1\|1B	Title: Crystal structure of the Thermus thermophilus 70S ribosome in complex with cisplatin (co-crystallized) and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution	X-RAY DIFFRACTION	2.6	120
63	4W4G\|1\|RB	Title: Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon	X-RAY DIFFRACTION	3.3	122
64	4YZV\|1\|RB	Title: Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon	X-RAY DIFFRACTION	3.1	122
65	4YPB\|1\|RB	Title: Precleavage 70S structure of the P. vulgaris HigB DeltaH92 toxin bound to the AAA codon	X-RAY DIFFRACTION	3.4	122
66	4V9Q\|1\|CB	Title: Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.	X-RAY DIFFRACTION	3.4	119
67	4V9Q\|1\|AB	Title: Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.	X-RAY DIFFRACTION	3.4	119
68	5D8B\|1\|AD	Title: Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch	X-RAY DIFFRACTION	3.63	119
69	5D8B\|1\|WC	Title: Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch	X-RAY DIFFRACTION	3.63	119
70	4XEJ\|1\|A5S	Title: IRES bound to bacterial Ribosome	X-RAY DIFFRACTION	3.8	119
71	4XEJ\|1\|B5S	Title: IRES bound to bacterial Ribosome	X-RAY DIFFRACTION	3.8	119
72	4V84\|1\|DB	Title: Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.	X-RAY DIFFRACTION	3.4	119
73	4V84\|1\|BB	Title: Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.	X-RAY DIFFRACTION	3.4	119
74	4V83\|1\|DB	Title: Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.	X-RAY DIFFRACTION	3.5	119
75	4V83\|1\|BB	Title: Crystal structure of a complex containing domain 3 from the PSIV IGR IRES RNA bound to the 70S ribosome.	X-RAY DIFFRACTION	3.5	119
76	5IMQ\|1\|E	Title: Structure of ribosome bound to cofactor at 3.8 angstrom resolution	ELECTRON MICROSCOPY	3.8	123
77	4V4J\|1\|x	Title: Interactions and Dynamics of the Shine-Dalgarno Helix in the 70S Ribosome.	X-RAY DIFFRACTION	3.83	120

Coloring options: Nucleotide numbers

Equivalence class NR_4.0_92484.1 Obsolete

Release history

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