Equivalence class NR_4.0_88773.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4K4W|1|F+ 4K4W|1|G (rep) | RNA (5'-R(P*GP*GP*GP*AP*GP*AP*UP*GP*AP*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*UP*CP*GP*UP*CP*GP*AP*AP*A)-3'), RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*AP*GP*AP*CP*C)-3') | Poliovirus polymerase elongation complex (r5+2_form) | X-ray diffraction | 2.69 | 2013-05-22 | ||||
| 2 | 4K4W|1|B+ 4K4W|1|C | RNA (5'-R(P*GP*GP*GP*AP*GP*AP*UP*GP*AP*AP*AP*GP*UP*CP*UP*CP*CP*AP*GP*GP*UP*CP*UP*CP*UP*CP*UP*CP*GP*UP*CP*GP*AP*AP*A)-3'), RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*AP*GP*AP*CP*C)-3') | Poliovirus polymerase elongation complex (r5+2_form) | X-ray diffraction | 2.69 | 2013-05-22 | ||||
| 3 | 5F8J|1|B+ 5F8J|1|C | RNA (35-MER), RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*AP*GP*AP*C)-3') | synthetic construct | Synthetic | Enterovirus 71 Polymerase Elongation Complex (C1S4 Form) | X-ray diffraction | 2.67 | 2016-06-22 | ||
| 4 | 5F8G|1|B+ 5F8G|1|C | RNA (35-MER), RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*AP*GP*A)-3') | synthetic construct | Synthetic | Enterovirus 71 Polymerase Elongation Complex (C1S1 Form) | X-ray diffraction | 2.78 | 2016-06-22 | ||
| 5 | 5F8M|1|B+ 5F8M|1|C | RNA (35-MER), RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*AP*GP*AP*CP*CP*U)-3') | synthetic construct | Synthetic | Enterovirus 71 Polymerase Elongation Complex (C3S4/5 Form) | X-ray diffraction | 2.83 | 2016-06-22 | ||
| 6 | 5F8H|1|B+ 5F8H|1|C | RNA (35-MER), RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*AP*GP*A)-3') | synthetic construct | Synthetic | Enterovirus 71 Polymerase Elongation Complex (C1S1/2 Form) | X-ray diffraction | 2.45 | 2016-06-22 | ||
| 7 | 5F8L|1|B+ 5F8L|1|C | RNA (35-MER), RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*AP*GP*AP*CP*C)-3') | synthetic construct | Synthetic | Enterovirus 71 Polymerase Elongation Complex (C3S1 Form) | X-ray diffraction | 2.81 | 2016-06-22 | ||
| 8 | 5F8I|1|B+ 5F8I|1|C | RNA (35-MER), RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*AP*GP*A)-3') | synthetic construct | Synthetic | Enterovirus 71 Polymerase Elongation Complex (C1S2/3 Form) | X-ray diffraction | 2.5 | 2016-06-22 | ||
| 9 | 5F8N|1|B+ 5F8N|1|C | RNA (35-MER), RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*GP*AP*GP*AP*GP*AP*CP*CP*U)-3') | synthetic construct | Synthetic | Enterovirus 71 Polymerase Elongation Complex (C3S6 Form) | X-ray diffraction | 2.48 | 2016-06-22 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_88773.1 | NR_all_17075.1 | 4.0 | (4) 5F8I|1|B+5F8I|1|C, 5F8H|1|B+5F8H|1|C, 5F8G|1|B+5F8G|1|C, 5F8J|1|B+5F8J|1|C | (5) 5F8N|1|B+5F8N|1|C, 5F8M|1|B+5F8M|1|C, 5F8L|1|B+5F8L|1|C, 4K4W|1|F+4K4W|1|G, 4K4W|1|B+4K4W|1|C | (0) |
| NR_4.0_88773.1 | NR_all_59108.1 | 4.0 | (5) 5F8N|1|B+5F8N|1|C, 5F8M|1|B+5F8M|1|C, 5F8L|1|B+5F8L|1|C, 4K4W|1|F+4K4W|1|G, 4K4W|1|B+4K4W|1|C | (4) 5F8J|1|B+5F8J|1|C, 5F8I|1|B+5F8I|1|C, 5F8H|1|B+5F8H|1|C, 5F8G|1|B+5F8G|1|C | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 5F8G|1|B+5F8G|1|C | Title: Enterovirus 71 Polymerase Elongation Complex (C1S1 Form) | X-RAY DIFFRACTION | 2.78 | 12 | ||
| 2 | 5F8J|1|B+5F8J|1|C | Title: Enterovirus 71 Polymerase Elongation Complex (C1S4 Form) | X-RAY DIFFRACTION | 2.67 | 12 | ||
| 3 | 5F8I|1|B+5F8I|1|C | Title: Enterovirus 71 Polymerase Elongation Complex (C1S2/3 Form) | X-RAY DIFFRACTION | 2.5 | 12 | ||
| 4 | 5F8H|1|B+5F8H|1|C | Title: Enterovirus 71 Polymerase Elongation Complex (C1S1/2 Form) | X-RAY DIFFRACTION | 2.45 | 12 | ||
| 5 | 4K4W|1|B+4K4W|1|C | Title: Poliovirus polymerase elongation complex (r5+2_form) | X-RAY DIFFRACTION | 2.69 | 21 | ||
| 6 | 4K4W|1|F+4K4W|1|G | Title: Poliovirus polymerase elongation complex (r5+2_form) | X-RAY DIFFRACTION | 2.69 | 21 | ||
| 7 | 5F8M|1|B+5F8M|1|C | Title: Enterovirus 71 Polymerase Elongation Complex (C3S4/5 Form) | X-RAY DIFFRACTION | 2.83 | 12 | ||
| 8 | 5F8L|1|B+5F8L|1|C | Title: Enterovirus 71 Polymerase Elongation Complex (C3S1 Form) | X-RAY DIFFRACTION | 2.81 | 12 | ||
| 9 | 5F8N|1|B+5F8N|1|C | Title: Enterovirus 71 Polymerase Elongation Complex (C3S6 Form) | X-RAY DIFFRACTION | 2.48 | 9 |
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