Equivalence class NR_4.0_87289.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3CMA|1|5 (rep) | RNA (5'-R(*CP*CP*A)-3') | The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui | X-ray diffraction | 2.8 | 2008-09-23 | ||||
| 2 | 5GAD|1|2 | tRNA CCAend | Escherichia coli | Bacteria | RNC-SRP-SR complex early state | Electron microscopy | 3.7 | 2016-01-27 | ||
| 3 | 5GAG|1|2 | tRNA CCAend | Escherichia coli | Bacteria | RNC in complex with SRP-SR in the closed state | Electron microscopy | 3.8 | 2016-01-27 | ||
| 4 | 5GAH|1|2 | tRNA CCAend | Escherichia coli | Bacteria | RNC in complex with SRP with detached NG domain | Electron microscopy | 3.8 | 2016-01-27 | ||
| 5 | 1QVG|1|3 | Oligonucleotide CCA | Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui | X-ray diffraction | 2.9 | 2003-11-11 | ||||
| 6 | 5GAE|1|x | tRNA CCA end (5'-R(P*CP*CP*A)-3') | Escherichia coli | Bacteria | RNC in complex with a translocating SecYEG | Electron microscopy | 3.33 | 2016-01-27 | ||
| 7 | 1VQO|1|4 | 5'-R(*CP*CP*(PPU))-3' | The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui | X-ray diffraction | 2.2 | 2005-11-29 | ||||
| 8 | 3CD6|1|4 | RNA (5'-R(*CP*CP*(PPU))-3') | Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin | X-ray diffraction | 2.75 | 2008-05-20 | ||||
| 9 | 3CME|1|5 | RNA (5'-R(*C*CP*A)-3') | The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui | X-ray diffraction | 2.95 | 2008-09-23 | ||||
| 10 | 4YZV|1|Z6 | CC-puromycin | Streptomyces alboniger | Bacteria | Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon | X-ray diffraction | 3.1 | 2015-10-21 | ||
| 11 | 4YZV|1|Z7 | CC-puromycin | Streptomyces alboniger | Bacteria | Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon | X-ray diffraction | 3.1 | 2015-10-21 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_87289.1 | NR_all_31557.1 | 3.0 | (3) 3CMA|1|5, 3CD6|1|4, 1VQO|1|4 | (8) 5GAH|1|2, 5GAG|1|2, 5GAE|1|x, 5GAD|1|2, 4YZV|1|Z7, 4YZV|1|Z6, 3CME|1|5, 1QVG|1|3 | (0) |
| NR_4.0_87289.1 | NR_all_75406.1 | 3.0 | (1) 1QVG|1|3 | (10) 3CMA|1|5, 3CD6|1|4, 1VQO|1|4, 5GAH|1|2, 5GAG|1|2, 5GAE|1|x, 5GAD|1|2, 4YZV|1|Z7, 4YZV|1|Z6, 3CME|1|5 | (0) |
| NR_4.0_87289.1 | NR_all_97418.1 | 3.0 | (1) 3CME|1|5 | (10) 5GAH|1|2, 5GAG|1|2, 5GAE|1|x, 5GAD|1|2, 4YZV|1|Z7, 4YZV|1|Z6, 3CMA|1|5, 3CD6|1|4, 1VQO|1|4, 1QVG|1|3 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_87289.1 | NR_4.0_45382.1 | 6.0 | (1) 5GAD|1|2 | (10) 3CMA|1|5, 4YZV|1|Z6, 5GAE|1|x, 1QVG|1|3, 5GAH|1|2, 3CD6|1|4, 3CME|1|5, 4YZV|1|Z7, 5GAG|1|2, 1VQO|1|4 | (0) |
| NR_4.0_87289.1 | NR_4.0_84495.1 | 6.0 | (3) 3CMA|1|5, 4YZV|1|Z7, 4YZV|1|Z6 | (8) 1QVG|1|3, 1VQO|1|4, 3CD6|1|4, 3CME|1|5, 5GAD|1|2, 5GAE|1|x, 5GAG|1|2, 5GAH|1|2 | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4YZV|1|Z6 | Title: Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon | X-RAY DIFFRACTION | 3.1 | 2 | ||
| 2 | 1VQO|1|4 | Title: The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui | X-RAY DIFFRACTION | 2.2 | 2 | ||
| 3 | 3CD6|1|4 | Title: Co-cystal of large Ribosomal Subunit mutant G2616A with CC-Puromycin | X-RAY DIFFRACTION | 2.75 | 2 | ||
| 4 | 3CMA|1|5 | Title: The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui | X-RAY DIFFRACTION | 2.8 | 3 | ||
| 5 | 4YZV|1|Z7 | Title: Precleavage 70S structure of the P. vulgaris HigB deltaH92 toxin bound to the ACA codon | X-RAY DIFFRACTION | 3.1 | 2 | ||
| 6 | 5GAE|1|x | Title: RNC in complex with a translocating SecYEG | ELECTRON MICROSCOPY | 3.33 | 3 | ||
| 7 | 5GAH|1|2 | Title: RNC in complex with SRP with detached NG domain | ELECTRON MICROSCOPY | 3.8 | 3 | ||
| 8 | 5GAD|1|2 | Title: RNC-SRP-SR complex early state | ELECTRON MICROSCOPY | 3.7 | 3 | ||
| 9 | 5GAG|1|2 | Title: RNC in complex with SRP-SR in the closed state | ELECTRON MICROSCOPY | 3.8 | 3 | ||
| 10 | 3CME|1|5 | Title: The Structure of CA and CCA-PHE-CAP-BIO Bound to the Large Ribosomal Subunit of Haloarcula Marismortui | X-RAY DIFFRACTION | 2.95 | 2 | ||
| 11 | 1QVG|1|3 | Title: Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui | X-RAY DIFFRACTION | 2.9 | 3 |
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