Equivalence class NR_4.0_85541.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4A3G|1|P (rep) | TRANSCRIPT RNA 5'-R(*CP*AP)-3' | Saccharomyces cerevisiae | Eukarya | RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid | X-ray diffraction | 3.5 | 2012-02-08 | ||
| 2 | 4A3J|1|P | 5'-R(*CP*AP)-3' | synthetic construct | Synthetic | RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid and soaked with GMPCPP | X-ray diffraction | 3.7 | 2011-12-07 | ||
| 3 | 3J9M|1|u | E-site tRNA | Homo sapiens | Mitochondria | Structure of the human mitochondrial ribosome (class 1) | Electron microscopy | 3.5 | 2015-04-15 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_85541.1 | NR_all_12710.1 | 3.0 | (1) 4A3J|1|P | (2) 4A3G|1|P, 3J9M|1|u | (0) |
| NR_4.0_85541.1 | NR_all_79404.1 | 3.0 | (1) 4A3G|1|P | (2) 3J9M|1|u, 4A3J|1|P | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_85541.1 | NR_4.0_37924.1 | 6.0 | (1) 3J9M|1|u | (2) 4A3J|1|P, 4A3G|1|P | (0) |
| NR_4.0_85541.1 | NR_4.0_77289.1 | 6.0 | (1) 4A3G|1|P | (2) 4A3J|1|P, 3J9M|1|u | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4A3G|1|P | Title: RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid | X-RAY DIFFRACTION | 3.5 | 2 | ||
| 2 | 3J9M|1|u | Title: Structure of the human mitochondrial ribosome (class 1) | ELECTRON MICROSCOPY | 3.5 | 2 | ||
| 3 | 4A3J|1|P | Title: RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid and soaked with GMPCPP | X-RAY DIFFRACTION | 3.7 | 2 |
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