NR_4.0_81620.2

Members (29)
History
Heat map

#	IFE	Standardized name	Molecule	Organism	Source	Rfam	Title	Method	Res. Å	Date
1	2XNZ\|1\|A (rep)	Purine riboswitch	Guanine riboswitch	Bacillus subtilis	Bacteria	RF00167	xpt-pbuX C74U Riboswitch from B. subtilis bound to acetoguanamine identified by virtual screening	X-ray diffraction	1.59	2011-04-06
2	3FO4\|1\|A	Purine riboswitch	Guanine riboswitch C74U mutant			RF00167	Crystal structure of guanine riboswitch C74U mutant bound to 6-chloroguanine	X-ray diffraction	1.9	2009-06-23
3	3GOG\|1\|A	Purine riboswitch	Guanine riboswitch			RF00167	Guanine riboswitch A21G,U75C mutant bound to 6-chloroguanine	X-ray diffraction	2.1	2009-06-23
4	2EEV\|1\|A	Purine riboswitch	guanine riboswitch			RF00167	Guanine riboswitch U22C, A52G mutant bound to hypoxanthine	X-ray diffraction	1.95	2007-11-13
5	2G9C\|1\|A	Purine riboswitch	guanine riboswitch			RF00167	Modified pyrimidines Specifically bind the purine riboswitch	X-ray diffraction	1.7	2006-11-21
6	3FO6\|1\|A	Purine riboswitch	Guanine riboswitch			RF00167	Crystal structure of guanine riboswitch bound to 6-O-methylguanine	X-ray diffraction	1.9	2009-06-23
7	3GAO\|1\|A	Purine riboswitch	Guanine riboswitch			RF00167	Crystal structure of the guanine riboswitch bound to xanthine.	X-ray diffraction	1.9	2009-06-23
8	3GER\|1\|A	Purine riboswitch	Guanine riboswitch			RF00167	Guanine riboswitch bound to 6-chloroguanine	X-ray diffraction	1.7	2009-06-23
9	2EET\|1\|A	Purine riboswitch	Guanine Riboswitch			RF00167	Guanine Riboswitch A21G, U75C mutant bound to hypoxanthine	X-ray diffraction	1.95	2007-11-13
10	4FEN\|1\|B	Purine riboswitch	A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain			RF00167	Crystal structure of the A24U/U25A/A46G mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine	X-ray diffraction	1.35	2013-02-27
11	4FEO\|1\|B	Purine riboswitch	U25A/A46G/C74U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain			RF00167	Crystal structure of the AU25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine	X-ray diffraction	1.6	2013-02-27
12	4FE5\|1\|B	Purine riboswitch	xpt-pbuX guanine riboswitch aptamer domain			RF00167	Crystal structure of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine	X-ray diffraction	1.32	2012-06-27
13	4FEP\|1\|B	Purine riboswitch	A24U/U25A/A46G/C74U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain			RF00167	Crystal structure of the A24U/U25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine	X-ray diffraction	1.65	2013-02-27
14	2EEW\|1\|A	Purine riboswitch	Guanine riboswitch			RF00167	Guanine Riboswitch U47C mutant bound to hypoxanthine	X-ray diffraction	2.25	2007-11-13
15	2EES\|1\|A	Purine riboswitch	Guanine riboswitch			RF00167	Guanine riboswitch A21U, U75A mutant bound to hypoxanthine	X-ray diffraction	1.75	2007-11-13
16	2EEU\|1\|A	Purine riboswitch	Guanine riboswitch			RF00167	Guanine riboswitch U22A, A52U mutant bound to hypoxanthine	X-ray diffraction	1.95	2007-11-13
17	3GES\|1\|A	Purine riboswitch	Guanine riboswitch			RF00167	Crystal structure of the guanine riboswitch C74U mutant bound to 6-O-methylguanine	X-ray diffraction	2.15	2009-06-23
18	3DS7\|1\|A	Purine riboswitch	67-MER			RF00167	Structure of an RNA-2'-deoxyguanosine complex	X-ray diffraction	1.85	2009-02-17
19	4FEJ\|1\|B	Purine riboswitch	A24U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain			RF00167	Crystal structure of the A24U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine	X-ray diffraction	1.5	2013-02-27
20	5C7U\|1\|B	Purine riboswitch	5'-monophosphate wt guanine riboswitch	Bacillus subtilis	Bacteria	RF00167	5'-monophosphate wt Guanine Riboswitch bound to hypoxanthine.	X-ray diffraction	3.05	2015-08-12
21	3DS7\|1\|B	Purine riboswitch	67-MER			RF00167	Structure of an RNA-2'-deoxyguanosine complex	X-ray diffraction	1.85	2009-02-17
22	4FEL\|1\|B	Purine riboswitch	U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain			RF00167	Crystal structure of the U25A/A46G mutant of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine	X-ray diffraction	1.6	2013-02-27
23	2XO0\|1\|A	Purine riboswitch	Guanine riboswitch	Bacillus subtilis	Bacteria	RF00167	xpt-pbuX C74U Riboswitch from B. subtilis bound to 24-diamino-1,3,5- triazine identified by virtual screening	X-ray diffraction	1.7	2011-04-06
24	2XNW\|1\|A	Purine riboswitch	GUANINE RIBOSWITCH	Bacillus subtilis	Bacteria	RF00167	XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO- TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENING	X-ray diffraction	1.5	2011-04-06
25	2XO1\|1\|A	Purine riboswitch	Guanine riboswitch	Bacillus subtilis	Bacteria	RF00167	xpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenine	X-ray diffraction	1.6	2011-04-06
26	3GOT\|1\|A	Purine riboswitch	Guanine riboswitch			RF00167	Guanine riboswitch C74U mutant bound to 2-fluoroadenine.	X-ray diffraction	1.95	2009-06-23
27	3G4M\|1\|A	Purine riboswitch	Guanine riboswitch			RF00167	Crystal structure of guanine riboswitch bound to 2-aminopurine	X-ray diffraction	2.4	2009-06-23
28	2B57\|1\|A	Purine riboswitch	65-MER			RF00167	Guanine Riboswitch C74U mutant bound to 2,6-diaminopurine	X-ray diffraction	2.15	2006-05-23
29	5C7W\|1\|C	Purine riboswitch	5'-monophosphate Z:P guanine riboswitch	synthetic construct	Synthetic	RF00167	5'-monophosphate Z:P Guanine Riboswitch bound to hypoxanthine.	X-ray diffraction	3.22	2015-08-12

Release history

Release	3.0	4.0	5.0
Date	2016-07-25	2016-07-25	2016-07-25

Parents

This class	Parent classes	Release id	Intersection	Added to this class	Only in parent
NR_4.0_81620.2	NR_all_81620.1	3.0	(27) 2XO0\|1\|A, 4FEO\|1\|B, 2XNZ\|1\|A, 4FEN\|1\|B, 2XNW\|1\|A, 4FEL\|1\|B, 2G9C\|1\|A, 4FEJ\|1\|B, 2EEW\|1\|A, 4FE5\|1\|B, 2EEV\|1\|A, 3GOT\|1\|A, 2EEU\|1\|A, 3GOG\|1\|A, 2EET\|1\|A, 3GES\|1\|A, 2EES\|1\|A, 3GER\|1\|A, 2B57\|1\|A, 3GAO\|1\|A, 3G4M\|1\|A, 3FO6\|1\|A, 3FO4\|1\|A, 3DS7\|1\|B, 3DS7\|1\|A, 2XO1\|1\|A, 4FEP\|1\|B	(2) 5C7U\|1\|B, 5C7W\|1\|C	(0)

Children

This class	Descendant classes	Release id	Intersection	Only in this class	Added to child
NR_4.0_81620.2	NR_4.0_26996.1	6.0	(1) 2XNZ\|1\|A	(28) 2B57\|1\|A, 2EES\|1\|A, 2EET\|1\|A, 2EEU\|1\|A, 2EEV\|1\|A, 2EEW\|1\|A, 2G9C\|1\|A, 2XNW\|1\|A, 2XO0\|1\|A, 2XO1\|1\|A, 3DS7\|1\|A, 3DS7\|1\|B, 3FO4\|1\|A, 3FO6\|1\|A, 3G4M\|1\|A, 3GAO\|1\|A, 3GER\|1\|A, 3GES\|1\|A, 3GOG\|1\|A, 3GOT\|1\|A, 4FE5\|1\|B, 4FEJ\|1\|B, 4FEL\|1\|B, 4FEN\|1\|B, 4FEO\|1\|B, 4FEP\|1\|B, 5C7U\|1\|B, 5C7W\|1\|C	(0)

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).

#S	PDB	Title	Method	Resolution	Length
1	5C7W\|1\|C	Title: 5'-monophosphate Z:P Guanine Riboswitch bound to hypoxanthine.	X-RAY DIFFRACTION	3.22	65
2	5C7U\|1\|B	Title: 5'-monophosphate wt Guanine Riboswitch bound to hypoxanthine.	X-RAY DIFFRACTION	3.05	67
3	4FEL\|1\|B	Title: Crystal structure of the U25A/A46G mutant of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine	X-RAY DIFFRACTION	1.6	67
4	4FEP\|1\|B	Title: Crystal structure of the A24U/U25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine	X-RAY DIFFRACTION	1.65	67
5	4FEN\|1\|B	Title: Crystal structure of the A24U/U25A/A46G mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine	X-RAY DIFFRACTION	1.35	67
6	4FEO\|1\|B	Title: Crystal structure of the AU25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine	X-RAY DIFFRACTION	1.6	67
7	3G4M\|1\|A	Title: Crystal structure of guanine riboswitch bound to 2-aminopurine	X-RAY DIFFRACTION	2.4	67
8	2EES\|1\|A	Title: Guanine riboswitch A21U, U75A mutant bound to hypoxanthine	X-RAY DIFFRACTION	1.75	67
9	2EET\|1\|A	Title: Guanine Riboswitch A21G, U75C mutant bound to hypoxanthine	X-RAY DIFFRACTION	1.95	67
10	4FEJ\|1\|B	Title: Crystal structure of the A24U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine	X-RAY DIFFRACTION	1.5	67
11	3GOG\|1\|A	Title: Guanine riboswitch A21G,U75C mutant bound to 6-chloroguanine	X-RAY DIFFRACTION	2.1	65
12	3FO6\|1\|A	Title: Crystal structure of guanine riboswitch bound to 6-O-methylguanine	X-RAY DIFFRACTION	1.9	67
13	2XO1\|1\|A	Title: xpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenine	X-RAY DIFFRACTION	1.6	65
14	4FE5\|1\|B	Title: Crystal structure of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine	X-RAY DIFFRACTION	1.32	67
15	3FO4\|1\|A	Title: Crystal structure of guanine riboswitch C74U mutant bound to 6-chloroguanine	X-RAY DIFFRACTION	1.9	63
16	3GER\|1\|A	Title: Guanine riboswitch bound to 6-chloroguanine	X-RAY DIFFRACTION	1.7	67
17	2XNZ\|1\|A	Title: xpt-pbuX C74U Riboswitch from B. subtilis bound to acetoguanamine identified by virtual screening	X-RAY DIFFRACTION	1.59	65
18	2G9C\|1\|A	Title: Modified pyrimidines Specifically bind the purine riboswitch	X-RAY DIFFRACTION	1.7	67
19	2EEW\|1\|A	Title: Guanine Riboswitch U47C mutant bound to hypoxanthine	X-RAY DIFFRACTION	2.25	67
20	2B57\|1\|A	Title: Guanine Riboswitch C74U mutant bound to 2,6-diaminopurine	X-RAY DIFFRACTION	2.15	65
21	3GOT\|1\|A	Title: Guanine riboswitch C74U mutant bound to 2-fluoroadenine.	X-RAY DIFFRACTION	1.95	67
22	2XNW\|1\|A	Title: XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO- TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENING	X-RAY DIFFRACTION	1.5	65
23	2EEU\|1\|A	Title: Guanine riboswitch U22A, A52U mutant bound to hypoxanthine	X-RAY DIFFRACTION	1.95	67
24	3GAO\|1\|A	Title: Crystal structure of the guanine riboswitch bound to xanthine.	X-RAY DIFFRACTION	1.9	67
25	2XO0\|1\|A	Title: xpt-pbuX C74U Riboswitch from B. subtilis bound to 24-diamino-1,3,5- triazine identified by virtual screening	X-RAY DIFFRACTION	1.7	65
26	3GES\|1\|A	Title: Crystal structure of the guanine riboswitch C74U mutant bound to 6-O-methylguanine	X-RAY DIFFRACTION	2.15	67
27	2EEV\|1\|A	Title: Guanine riboswitch U22C, A52G mutant bound to hypoxanthine	X-RAY DIFFRACTION	1.95	67
28	3DS7\|1\|A	Title: Structure of an RNA-2'-deoxyguanosine complex	X-RAY DIFFRACTION	1.85	67
29	3DS7\|1\|B	Title: Structure of an RNA-2'-deoxyguanosine complex	X-RAY DIFFRACTION	1.85	67

Coloring options: Nucleotide numbers

Equivalence class NR_4.0_81620.2 Obsolete

Release history

Parents

Children