Equivalence class NR_4.0_78117.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2PWT|1|A+ 2PWT|1|B (rep) | 22-mer of the ribosomal decoding site | Crystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA group | X-ray diffraction | 1.8 | 2007-09-18 | ||||
| 2 | 2F4S|1|A+ 2F4S|1|B | 5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3' | A-site RNA in complex with neamine | X-ray diffraction | 2.8 | 2006-05-02 | ||||
| 3 | 3BNN|1|A+ 3BNN|1|B | A site of human ribosome | Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site | X-ray diffraction | 2 | 2008-06-24 | ||||
| 4 | 3S4P|1|A+ 3S4P|1|B | RNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3') | Crystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogue | X-ray diffraction | 2.56 | 2011-09-21 | ||||
| 5 | 4F8V|1|A+ 4F8V|1|B | RNA (5'-R(P*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3') | Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form) | X-ray diffraction | 2.8 | 2012-08-15 | ||||
| 6 | 2F4U|1|A+ 2F4U|1|B | 5'-R(*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3' | Asite RNA + designer antibiotic | X-ray diffraction | 2.6 | 2006-05-02 | ||||
| 7 | 3BNN|1|C+ 3BNN|1|D | A site of human ribosome | Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site | X-ray diffraction | 2 | 2008-06-24 | ||||
| 8 | 3BNO|1|A+ 3BNO|1|B | A site of human mitochondrial ribosome | Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (Br-derivative) | X-ray diffraction | 2.35 | 2008-06-24 | ||||
| 9 | 3BNO|1|C+ 3BNO|1|D | A site of human mitochondrial ribosome | Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (Br-derivative) | X-ray diffraction | 2.35 | 2008-06-24 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_78117.1 | NR_all_06940.1 | 4.0 | (4) 3BNO|1|C+3BNO|1|D, 3BNO|1|A+3BNO|1|B, 3BNN|1|C+3BNN|1|D, 3BNN|1|A+3BNN|1|B | (5) 2F4U|1|A+2F4U|1|B, 2F4S|1|A+2F4S|1|B, 4F8V|1|A+4F8V|1|B, 3S4P|1|A+3S4P|1|B, 2PWT|1|A+2PWT|1|B | (0) |
| NR_4.0_78117.1 | NR_all_28698.1 | 4.0 | (1) 2F4U|1|A+2F4U|1|B | (8) 4F8V|1|A+4F8V|1|B, 3S4P|1|A+3S4P|1|B, 3BNO|1|C+3BNO|1|D, 3BNO|1|A+3BNO|1|B, 3BNN|1|C+3BNN|1|D, 3BNN|1|A+3BNN|1|B, 2PWT|1|A+2PWT|1|B, 2F4S|1|A+2F4S|1|B | (0) |
| NR_4.0_78117.1 | NR_all_35569.1 | 4.0 | (3) 4F8V|1|A+4F8V|1|B, 3S4P|1|A+3S4P|1|B, 2PWT|1|A+2PWT|1|B | (6) 3BNO|1|C+3BNO|1|D, 3BNO|1|A+3BNO|1|B, 3BNN|1|C+3BNN|1|D, 3BNN|1|A+3BNN|1|B, 2F4U|1|A+2F4U|1|B, 2F4S|1|A+2F4S|1|B | (0) |
| NR_4.0_78117.1 | NR_all_57283.1 | 4.0 | (1) 2F4S|1|A+2F4S|1|B | (8) 3BNN|1|A+3BNN|1|B, 2PWT|1|A+2PWT|1|B, 2F4U|1|A+2F4U|1|B, 4F8V|1|A+4F8V|1|B, 3S4P|1|A+3S4P|1|B, 3BNO|1|C+3BNO|1|D, 3BNO|1|A+3BNO|1|B, 3BNN|1|C+3BNN|1|D | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3BNO|1|C+3BNO|1|D | Title: Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (Br-derivative) | X-RAY DIFFRACTION | 2.35 | 20 | ||
| 2 | 3BNN|1|C+3BNN|1|D | Title: Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site | X-RAY DIFFRACTION | 2 | 21 | ||
| 3 | 3BNO|1|A+3BNO|1|B | Title: Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site (Br-derivative) | X-RAY DIFFRACTION | 2.35 | 20 | ||
| 4 | 3BNN|1|A+3BNN|1|B | Title: Crystal Structure of the Homo sapiens Mitochondrial Ribosomal Decoding Site | X-RAY DIFFRACTION | 2 | 21 | ||
| 5 | 4F8V|1|A+4F8V|1|B | Title: Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form) | X-RAY DIFFRACTION | 2.8 | 21 | ||
| 6 | 2PWT|1|A+2PWT|1|B | Title: Crystal structure of the bacterial ribosomal decoding site complexed with aminoglycoside containing the L-HABA group | X-RAY DIFFRACTION | 1.8 | 21 | ||
| 7 | 3S4P|1|A+3S4P|1|B | Title: Crystal structure of the bacterial ribosomal decoding site complexed with an amphiphilic paromomycin O2''-ether analogue | X-RAY DIFFRACTION | 2.56 | 21 | ||
| 8 | 2F4U|1|A+2F4U|1|B | Title: Asite RNA + designer antibiotic | X-RAY DIFFRACTION | 2.6 | 21 | ||
| 9 | 2F4S|1|A+2F4S|1|B | Title: A-site RNA in complex with neamine | X-RAY DIFFRACTION | 2.8 | 21 |
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