Equivalence class NR_4.0_78017.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4NFO|1|B+ 4NFO|1|C (rep) | GCAGACUUAAGUCUGC | Crystal Structure Analysis of the 16mer GCAGACUUAAGUCUGC | X-ray diffraction | 1.96 | 2014-07-02 | ||||
| 2 | 4NFO|1|A | GCAGACUUAAGUCUGC | Crystal Structure Analysis of the 16mer GCAGACUUAAGUCUGC | X-ray diffraction | 1.96 | 2014-07-02 | ||||
| 3 | 4NFQ|1|A | GCAG(7AT)CUUAAGUCUGC | Crystal Structure Analysis of the 16mer GCAGNCUUAAGUCUGC containing 7-triazolyl-8-aza-7-deazaadenosine | X-ray diffraction | 1.7 | 2014-07-02 | ||||
| 4 | 4NFP|1|A | GCAG(A7E)CUUAAGUCUGC | Crystal Structure Analysis of the 16mer GCAGNCUUAAGUCUGC containing 8-aza-7-deaza-7-ethynyl Adenosine | X-ray diffraction | 1.85 | 2014-07-02 | ||||
| 5 | 4NFP|1|B+ 4NFP|1|C | GCAG(A7E)CUUAAGUCUGC | Crystal Structure Analysis of the 16mer GCAGNCUUAAGUCUGC containing 8-aza-7-deaza-7-ethynyl Adenosine | X-ray diffraction | 1.85 | 2014-07-02 | ||||
| 6 | 4NFQ|1|B+ 4NFQ|1|C | GCAG(7AT)CUUAAGUCUGC | Crystal Structure Analysis of the 16mer GCAGNCUUAAGUCUGC containing 7-triazolyl-8-aza-7-deazaadenosine | X-ray diffraction | 1.7 | 2014-07-02 | ||||
| 7 | 1YZD|1|C | RNA 5'-R(*GP*CP*AP*GP*AP*(A5M)P*UP*UP*AP*AP*GP*UP*CP*UP*GP*C)-3' | Crystal structure of an RNA duplex containing a site specific 2'-amine substitution at a C-G Watson-Crick base pair | X-ray diffraction | 2.35 | 2005-10-18 |
Release history
| Release | 5.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_78017.3 | NR_all_78017.2 | 5.0 | (7) 4NFQ|1|A, 1YZD|1|C, 4NFO|1|B+4NFO|1|C, 4NFP|1|B+4NFP|1|C, 4NFQ|1|B+4NFQ|1|C, 4NFO|1|A, 4NFP|1|A | (0) | (1) 1YZD|1|A+1YZD|1|B |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_78017.3 | NR_4.0_51664.1 | 6.0 | (3) 4NFO|1|A, 4NFO|1|B+4NFO|1|C, 1YZD|1|C | (4) 4NFQ|1|A, 4NFP|1|A, 4NFP|1|B+4NFP|1|C, 4NFQ|1|B+4NFQ|1|C | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4NFQ|1|A | Title: Crystal Structure Analysis of the 16mer GCAGNCUUAAGUCUGC containing 7-triazolyl-8-aza-7-deazaadenosine | X-RAY DIFFRACTION | 1.7 | 15 | ||
| 2 | 4NFQ|1|B+4NFQ|1|C | Title: Crystal Structure Analysis of the 16mer GCAGNCUUAAGUCUGC containing 7-triazolyl-8-aza-7-deazaadenosine | X-RAY DIFFRACTION | 1.7 | 15 | ||
| 3 | 4NFP|1|B+4NFP|1|C | Title: Crystal Structure Analysis of the 16mer GCAGNCUUAAGUCUGC containing 8-aza-7-deaza-7-ethynyl Adenosine | X-RAY DIFFRACTION | 1.85 | 15 | ||
| 4 | 4NFP|1|A | Title: Crystal Structure Analysis of the 16mer GCAGNCUUAAGUCUGC containing 8-aza-7-deaza-7-ethynyl Adenosine | X-RAY DIFFRACTION | 1.85 | 15 | ||
| 5 | 4NFO|1|A | Title: Crystal Structure Analysis of the 16mer GCAGACUUAAGUCUGC | X-RAY DIFFRACTION | 1.96 | 16 | ||
| 6 | 4NFO|1|B+4NFO|1|C | Title: Crystal Structure Analysis of the 16mer GCAGACUUAAGUCUGC | X-RAY DIFFRACTION | 1.96 | 16 | ||
| 7 | 1YZD|1|C | Title: Crystal structure of an RNA duplex containing a site specific 2'-amine substitution at a C-G Watson-Crick base pair | X-RAY DIFFRACTION | 2.35 | 15 |
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