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Equivalence class NR_4.0_73239.4 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
16D9J|1|5+ 6D9J|1|8 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.Electron microscopy3.22018-06-06
23J71|1|5+ 3J71|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian 60S ribosomal subunitElectron microscopy3.42014-06-18
33J72|1|5+ 3J72|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the idle mammalian ribosome-Sec61 complexElectron microscopy3.42014-06-18
43J74|1|5+ 3J74|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the 80S mammalian ribosome bound to eEF2Electron microscopy3.52014-06-18
55LZS|1|5+ 5LZS|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BElectron microscopy3.312016-11-30
65LZV|1|5+ 5LZV|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.Electron microscopy3.352016-11-30
76D90|1|5+ 6D90|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.Electron microscopy3.22018-06-06
85LZZ|1|5+ 5LZZ|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)Electron microscopy3.472016-11-30
95LZW|1|5+ 5LZW|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.Electron microscopy3.532016-11-30
105LZT|1|5+ 5LZT|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.Electron microscopy3.652016-11-30
113J73|1|5+ 3J73|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the translating mammalian ribosome-Sec61 complexElectron microscopy3.92014-06-18
125LZX|1|5+ 5LZX|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.Electron microscopy3.672016-11-30
136HCJ|1|51+ 6HCJ|1|81Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsElectron microscopy3.82018-10-17
145LZU|1|5+ 5LZU|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian ribosomal termination complex with accommodated eRF1Electron microscopy3.752016-11-30
156FRK|1|5+ 6FRK|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexElectron microscopy3.72018-03-28
166HCF|1|52+ 6HCF|1|82Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonElectron microscopy3.92018-10-17
173JAH|1|5+ 3JAH|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonElectron microscopy3.452015-08-12
183JAG|1|5+ 3JAG|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonElectron microscopy3.652015-08-12
195LZY|1|5+ 5LZY|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.Electron microscopy3.992016-11-30
203JAI|1|5+ 3JAI|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonElectron microscopy3.652015-08-12
213J92|1|5+ 3J92|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure and assembly pathway of the ribosome quality control complexElectron microscopy3.62015-01-21
221VWW|1|5+ 1VWW|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.Electron microscopy3.42014-06-18
231VWY|1|5+ 1VWY|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the idle mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA.Electron microscopy3.42014-06-18
241VX3|1|5+ 1VX3|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.Electron microscopy3.52014-06-18
251VX0|1|5+ 1VX0|1|828S ribosomal RNA, 5.8S ribosomal RNAStructure of the translating mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA.Electron microscopy3.92014-06-18
263JAN|1|5+ 3JAN|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the scanning state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05
273JAJ|1|5+ 3JAJ|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the engaged state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
16HCJ|1|51+6HCJ|1|81Title: Structure of the rabbit 80S ribosome on globin mRNA in the rotated state with A/P and P/E tRNAsELECTRON MICROSCOPY3.83635
25LZY|1|5+5LZY|1|8Title: Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.ELECTRON MICROSCOPY3.993543
35LZZ|1|5+5LZZ|1|8Title: Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.473543
45LZX|1|5+5LZX|1|8Title: Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.673543
55LZW|1|5+5LZW|1|8Title: Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.533543
65LZT|1|5+5LZT|1|8Title: Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.653543
75LZS|1|5+5LZS|1|8Title: Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.313543
85LZU|1|5+5LZU|1|8Title: Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.753543
95LZV|1|5+5LZV|1|8Title: Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.353543
106HCF|1|52+6HCF|1|82Title: Structure of the rabbit 80S ribosome stalled on globin mRNA at the stop codonELECTRON MICROSCOPY3.93634
116D90|1|5+6D90|1|8Title: Mammalian 80S ribosome with a double translocated CrPV-IRES, P-site tRNA and eRF1.ELECTRON MICROSCOPY3.23594
126D9J|1|5+6D9J|1|8Title: Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1.ELECTRON MICROSCOPY3.23594
133J74|1|5+3J74|1|8Title: Structure of the 80S mammalian ribosome bound to eEF2ELECTRON MICROSCOPY3.53662
141VX3|1|5+1VX3|1|8Title: Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.53662
151VWW|1|5+1VWW|1|8Title: Structure of the mammalian 60S ribosomal subunit. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.43662
163J71|1|5+3J71|1|8Title: Structure of the mammalian 60S ribosomal subunitELECTRON MICROSCOPY3.43662
173J72|1|5+3J72|1|8Title: Structure of the idle mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.43662
181VWY|1|5+1VWY|1|8Title: Structure of the idle mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.43662
193J73|1|5+3J73|1|8Title: Structure of the translating mammalian ribosome-Sec61 complexELECTRON MICROSCOPY3.93720
201VX0|1|5+1VX0|1|8Title: Structure of the translating mammalian ribosome-Sec61 complex. This entry contains the large subunit ribosomal RNA.ELECTRON MICROSCOPY3.93720
213JAH|1|5+3JAH|1|8Title: Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.453662
223JAG|1|5+3JAG|1|8Title: Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.653662
233JAI|1|5+3JAI|1|8Title: Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.653662
246FRK|1|5+6FRK|1|8Title: Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complexELECTRON MICROSCOPY3.73658
253JAJ|1|5+3JAJ|1|8Title: Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.753658
263JAN|1|5+3JAN|1|8Title: Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.753658
273J92|1|5+3J92|1|8Title: Structure and assembly pathway of the ribosome quality control complexELECTRON MICROSCOPY3.63662

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