RNA 3D Hub //

Equivalence class NR_4.0_73239.1 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
15LZS|1|5+ 5LZS|1|8 (rep)Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BElectron microscopy3.312016-11-30
25LZV|1|5+ 5LZV|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.Electron microscopy3.352016-11-30
35LZZ|1|5+ 5LZZ|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)Electron microscopy3.472016-11-30
45LZW|1|5+ 5LZW|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.Electron microscopy3.532016-11-30
55LZT|1|5+ 5LZT|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.Electron microscopy3.652016-11-30
65LZX|1|5+ 5LZX|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.Electron microscopy3.672016-11-30
75LZU|1|5+ 5LZU|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian ribosomal termination complex with accommodated eRF1Electron microscopy3.752016-11-30
83JAH|1|5+ 3JAH|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonElectron microscopy3.452015-08-12
93JAG|1|5+ 3JAG|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonElectron microscopy3.652015-08-12
105LZY|1|5+ 5LZY|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.Electron microscopy3.992016-11-30
113JAI|1|5+ 3JAI|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonElectron microscopy3.652015-08-12
123J92|1|5+ 3J92|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S rRNA, 5.8S rRNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure and assembly pathway of the ribosome quality control complexElectron microscopy3.62015-01-21
133JAN|1|5+ 3JAN|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the scanning state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05
143JAJ|1|5+ 3JAJ|1|8Large subunit ribosomal RNA + 5.8S ribosomal RNA28S ribosomal RNA, 5.8S ribosomal RNAOryctolagus cuniculusEukaryaRF02543 + RF00002Structure of the engaged state of the mammalian SRP-ribosome complexElectron microscopy3.752015-08-05

Release history

Release8.09.09.19.29.39.49.59.69.79.89.99.10
Date2017-04-052017-10-262017-11-072017-12-022017-12-132017-12-212017-12-222018-01-042018-01-052018-01-102018-01-112018-01-12

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_73239.1NR_4.0_68613.28.0(6) 3JAJ|1|5+3JAJ|1|8, 3J92|1|5+3J92|1|8, 3JAI|1|5+3JAI|1|8, 3JAH|1|5+3JAH|1|8, 3JAG|1|5+3JAG|1|8, 3JAN|1|5+3JAN|1|8(8) 5LZU|1|5+5LZU|1|8, 5LZT|1|5+5LZT|1|8, 5LZS|1|5+5LZS|1|8, 5LZZ|1|5+5LZZ|1|8, 5LZY|1|5+5LZY|1|8, 5LZX|1|5+5LZX|1|8, 5LZW|1|5+5LZW|1|8, 5LZV|1|5+5LZV|1|8(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLengthNAKB_NA_annotationNAKB_protein_annotation
15LZY|1|5+5LZY|1|8Title: Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a polyadenylated mRNA.ELECTRON MICROSCOPY3.993543
25LZZ|1|5+5LZZ|1|8Title: Structure of the mammalian rescue complex with Pelota and Hbs1l (combined)ELECTRON MICROSCOPY3.473543
35LZX|1|5+5LZX|1|8Title: Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a UGA stop codon.ELECTRON MICROSCOPY3.673543
45LZW|1|5+5LZW|1|8Title: Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.ELECTRON MICROSCOPY3.533543
55LZT|1|5+5LZT|1|8Title: Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.ELECTRON MICROSCOPY3.653543
65LZS|1|5+5LZS|1|8Title: Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin BELECTRON MICROSCOPY3.313543
75LZU|1|5+5LZU|1|8Title: Structure of the mammalian ribosomal termination complex with accommodated eRF1ELECTRON MICROSCOPY3.753543
85LZV|1|5+5LZV|1|8Title: Structure of the mammalian ribosomal termination complex with accommodated eRF1(AAQ) and ABCE1.ELECTRON MICROSCOPY3.353543
93JAI|1|5+3JAI|1|8Title: Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UGA stop codonELECTRON MICROSCOPY3.653662
103JAH|1|5+3JAH|1|8Title: Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAG stop codonELECTRON MICROSCOPY3.453662
113JAG|1|5+3JAG|1|8Title: Structure of a mammalian ribosomal termination complex with ABCE1, eRF1(AAQ), and the UAA stop codonELECTRON MICROSCOPY3.653662
123JAN|1|5+3JAN|1|8Title: Structure of the scanning state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.753658
133JAJ|1|5+3JAJ|1|8Title: Structure of the engaged state of the mammalian SRP-ribosome complexELECTRON MICROSCOPY3.753658
143J92|1|5+3J92|1|8Title: Structure and assembly pathway of the ribosome quality control complexELECTRON MICROSCOPY3.63662

Coloring options:

Copyright 2024 BGSU RNA group. Page generated in 0.0038 s