Equivalence class NR_4.0_73220.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3BSU|1|I (rep) | RNA (5'-R(*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*C)-3') | Hybrid-binding domain of human RNase H1 in complex with 12-mer RNA/DNA | X-ray diffraction | 2.1 | 2008-03-25 | ||||
| 2 | 4WKJ|1|A | RNA (5'-R(*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*C)-3') | Escherichia coli | Bacteria | Crystallographic Structure of a Dodecameric RNA-DNA Hybrid | X-ray diffraction | 2.8 | 2014-10-22 | ||
| 3 | 4WKJ|1|C | RNA (5'-R(*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*C)-3') | Escherichia coli | Bacteria | Crystallographic Structure of a Dodecameric RNA-DNA Hybrid | X-ray diffraction | 2.8 | 2014-10-22 | ||
| 4 | 4WKJ|1|D | RNA (5'-R(*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*C)-3') | Escherichia coli | Bacteria | Crystallographic Structure of a Dodecameric RNA-DNA Hybrid | X-ray diffraction | 2.8 | 2014-10-22 | ||
| 5 | 3BSU|1|D | RNA (5'-R(*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*C)-3') | Hybrid-binding domain of human RNase H1 in complex with 12-mer RNA/DNA | X-ray diffraction | 2.1 | 2008-03-25 | ||||
| 6 | 4WKJ|1|G | RNA (5'-R(*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*C)-3') | Escherichia coli | Bacteria | Crystallographic Structure of a Dodecameric RNA-DNA Hybrid | X-ray diffraction | 2.8 | 2014-10-22 |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 3BSU|1|D | Title: Hybrid-binding domain of human RNase H1 in complex with 12-mer RNA/DNA | X-RAY DIFFRACTION | 2.1 | 12 | ||
| 2 | 3BSU|1|I | Title: Hybrid-binding domain of human RNase H1 in complex with 12-mer RNA/DNA | X-RAY DIFFRACTION | 2.1 | 12 | ||
| 3 | 4WKJ|1|D | Title: Crystallographic Structure of a Dodecameric RNA-DNA Hybrid | X-RAY DIFFRACTION | 2.8 | 12 | ||
| 4 | 4WKJ|1|A | Title: Crystallographic Structure of a Dodecameric RNA-DNA Hybrid | X-RAY DIFFRACTION | 2.8 | 12 | ||
| 5 | 4WKJ|1|C | Title: Crystallographic Structure of a Dodecameric RNA-DNA Hybrid | X-RAY DIFFRACTION | 2.8 | 12 | ||
| 6 | 4WKJ|1|G | Title: Crystallographic Structure of a Dodecameric RNA-DNA Hybrid | X-RAY DIFFRACTION | 2.8 | 12 |
Coloring options: