Equivalence class NR_4.0_73220.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 1ZBI|1|C (rep) | 5'-R(*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*C)-3' | Bacillus halodurans RNase H catalytic domain mutant D132N in complex with 12-mer RNA/DNA hybrid | X-ray diffraction | 1.85 | 2005-07-12 | ||||
| 2 | 4WKJ|1|A | RNA (5'-R(*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*C)-3') | Escherichia coli | Bacteria | Crystallographic Structure of a Dodecameric RNA-DNA Hybrid | X-ray diffraction | 2.8 | 2014-10-22 | ||
| 3 | 4WKJ|1|C | RNA (5'-R(*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*C)-3') | Escherichia coli | Bacteria | Crystallographic Structure of a Dodecameric RNA-DNA Hybrid | X-ray diffraction | 2.8 | 2014-10-22 | ||
| 4 | 1ZBL|1|C | 5'-R(*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*C)-3' | Bacillus halodurans RNase H catalytic domain mutant D192N in complex with 12-mer RNA/DNA hybrid | X-ray diffraction | 2.2 | 2005-07-12 | ||||
| 5 | 4WKJ|1|D | RNA (5'-R(*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*C)-3') | Escherichia coli | Bacteria | Crystallographic Structure of a Dodecameric RNA-DNA Hybrid | X-ray diffraction | 2.8 | 2014-10-22 | ||
| 6 | 3BSU|1|D | RNA (5'-R(*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*C)-3') | Hybrid-binding domain of human RNase H1 in complex with 12-mer RNA/DNA | X-ray diffraction | 2.1 | 2008-03-25 | ||||
| 7 | 4WKJ|1|G | RNA (5'-R(*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*C)-3') | Escherichia coli | Bacteria | Crystallographic Structure of a Dodecameric RNA-DNA Hybrid | X-ray diffraction | 2.8 | 2014-10-22 | ||
| 8 | 3BSU|1|I | RNA (5'-R(*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*C)-3') | Hybrid-binding domain of human RNase H1 in complex with 12-mer RNA/DNA | X-ray diffraction | 2.1 | 2008-03-25 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2016-07-25 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_73220.2 | NR_all_62340.1 | 4.0 | (2) 1ZBL|1|C, 1ZBI|1|C | (6) 3BSU|1|D, 4WKJ|1|G, 4WKJ|1|D, 4WKJ|1|C, 4WKJ|1|A, 3BSU|1|I | (0) |
| NR_4.0_73220.2 | NR_all_73220.1 | 4.0 | (6) 4WKJ|1|G, 4WKJ|1|D, 4WKJ|1|C, 4WKJ|1|A, 3BSU|1|I, 3BSU|1|D | (2) 1ZBL|1|C, 1ZBI|1|C | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4WKJ|1|G | Title: Crystallographic Structure of a Dodecameric RNA-DNA Hybrid | X-RAY DIFFRACTION | 2.8 | 12 | ||
| 2 | 4WKJ|1|C | Title: Crystallographic Structure of a Dodecameric RNA-DNA Hybrid | X-RAY DIFFRACTION | 2.8 | 12 | ||
| 3 | 4WKJ|1|A | Title: Crystallographic Structure of a Dodecameric RNA-DNA Hybrid | X-RAY DIFFRACTION | 2.8 | 12 | ||
| 4 | 4WKJ|1|D | Title: Crystallographic Structure of a Dodecameric RNA-DNA Hybrid | X-RAY DIFFRACTION | 2.8 | 12 | ||
| 5 | 3BSU|1|I | Title: Hybrid-binding domain of human RNase H1 in complex with 12-mer RNA/DNA | X-RAY DIFFRACTION | 2.1 | 12 | ||
| 6 | 3BSU|1|D | Title: Hybrid-binding domain of human RNase H1 in complex with 12-mer RNA/DNA | X-RAY DIFFRACTION | 2.1 | 12 | ||
| 7 | 1ZBL|1|C | Title: Bacillus halodurans RNase H catalytic domain mutant D192N in complex with 12-mer RNA/DNA hybrid | X-RAY DIFFRACTION | 2.2 | 12 | ||
| 8 | 1ZBI|1|C | Title: Bacillus halodurans RNase H catalytic domain mutant D132N in complex with 12-mer RNA/DNA hybrid | X-RAY DIFFRACTION | 1.85 | 12 |
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