Equivalence class NR_4.0_72744.1 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 3WFS|1|A (rep) | Transfer RNA | RNA (74-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 3 | X-ray diffraction | 3.31 | 2014-01-01 |
| 2 | 3WFS|1|B | Transfer RNA | RNA (74-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 3 | X-ray diffraction | 3.31 | 2014-01-01 |
| 3 | 5HC9|1|D | Transfer RNA | tRNAphe | Thermotoga maritima | Bacteria | RF00005 | Thermotoga maritima CCA-adding enzyme complexed with tRNA_CCA | X-ray diffraction | 2.9 | 2016-04-27 |
| 4 | 5HC9|1|C | Transfer RNA | tRNAphe | Thermotoga maritima | Bacteria | RF00005 | Thermotoga maritima CCA-adding enzyme complexed with tRNA_CCA | X-ray diffraction | 2.9 | 2016-04-27 |
| 5 | 3WFR|1|C | Transfer RNA | RNA (75-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 2 | X-ray diffraction | 3.5 | 2014-01-01 |
| 6 | 3WFR|1|D | Transfer RNA | RNA (75-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 2 | X-ray diffraction | 3.5 | 2014-01-01 |
| 7 | 3WFQ|1|D | Transfer RNA | RNA (73-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 1 | X-ray diffraction | 3.62 | 2014-01-01 |
| 8 | 3WFR|1|B | Transfer RNA | RNA (74-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 2 | X-ray diffraction | 3.5 | 2014-01-01 |
| 9 | 3WFQ|1|C | Transfer RNA | RNA (73-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 1 | X-ray diffraction | 3.62 | 2014-01-01 |
| 10 | 4WC5|1|B | Transfer RNA | RNA (74-MER) | Thermotoga maritima | Bacteria | RF00005 | Structure of tRNA-processing enzyme complex 3 | X-ray diffraction | 3.41 | 2015-04-15 |
| 11 | 3WFR|1|A | Transfer RNA | RNA (74-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 2 | X-ray diffraction | 3.5 | 2014-01-01 |
| 12 | 4WC6|1|B | Transfer RNA | RNA (75-mer) | Thermotoga maritima | Bacteria | RF00005 | Structure of tRNA-processing enzyme complex 4 | X-ray diffraction | 3.41 | 2015-04-15 |
| 13 | 4WC2|1|B | Transfer RNA | RNA 75-mer | Thermotoga maritima | Bacteria | RF00005 | Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog | X-ray diffraction | 2.8 | 2015-04-15 |
| 14 | 3WFQ|1|A | Transfer RNA | RNA (73-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 1 | X-ray diffraction | 3.62 | 2014-01-01 |
| 15 | 3WFQ|1|B | Transfer RNA | RNA (73-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA processing enzyme complex 1 | X-ray diffraction | 3.62 | 2014-01-01 |
| 16 | 4WC4|1|B | Transfer RNA | RNA (74-MER) | Thermotoga maritima | Bacteria | RF00005 | tRNA-processing enzyme complex 2 | X-ray diffraction | 3.5 | 2015-04-15 |
| 17 | 4WC7|1|B | Transfer RNA | RNA (75-MER) | Thermotoga maritima | Bacteria | RF00005 | Structure of tRNA-processing enzyme complex 5 | X-ray diffraction | 3.1 | 2015-04-15 |
| 18 | 4WC3|1|B | Transfer RNA | RNA 76-mer | Thermotoga maritima | Bacteria | RF00005 | Structure of tRNA-processing enzyme complex 1 | X-ray diffraction | 3.1 | 2015-04-15 |
| 19 | 4X0A|1|B | Transfer RNA | RNA (73-MER) | Thermotoga maritima | Bacteria | RF00005 | Structure of tRNA-processing enzyme complex 6 | X-ray diffraction | 3.51 | 2015-04-15 |
| 20 | 4X0B|1|B | Transfer RNA | RNA (77-MER) | Thermotoga maritima | Bacteria | RF00005 | Structure of tRNA-processing enzyme complex 7 | X-ray diffraction | 3.2 | 2015-04-15 |
| 21 | 1VFG|1|C | Transfer RNA | RNA (75-MER) | RF00005 | Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog | X-ray diffraction | 2.8 | 2004-08-10 | ||
| 22 | 1VFG|1|D | Transfer RNA | RNA (75-MER) | RF00005 | Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog | X-ray diffraction | 2.8 | 2004-08-10 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_72744.1 | NR_all_62514.1 | 3.0 | (12) 3WFQ|1|C, 3WFR|1|B, 1VFG|1|D, 3WFS|1|A, 1VFG|1|C, 3WFQ|1|B, 3WFR|1|A, 3WFR|1|D, 3WFQ|1|A, 3WFQ|1|D, 3WFR|1|C, 3WFS|1|B | (10) 4WC4|1|B, 4WC6|1|B, 4WC2|1|B, 4X0A|1|B, 4WC3|1|B, 4WC5|1|B, 5HC9|1|D, 4WC7|1|B, 5HC9|1|C, 4X0B|1|B | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_72744.1 | NR_4.0_84757.1 | 6.0 | (2) 3WFS|1|A, 3WFS|1|B | (20) 3WFR|1|A, 3WFQ|1|A, 5HC9|1|C, 4WC7|1|B, 4WC3|1|B, 3WFR|1|C, 3WFQ|1|C, 1VFG|1|D, 4X0B|1|B, 4WC5|1|B, 4WC2|1|B, 3WFQ|1|B, 5HC9|1|D, 4WC4|1|B, 3WFQ|1|D, 4WC6|1|B, 3WFR|1|B, 1VFG|1|C, 4X0A|1|B, 3WFR|1|D | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 4X0A|1|B | Title: Structure of tRNA-processing enzyme complex 6 | X-RAY DIFFRACTION | 3.51 | 73 | ||
| 2 | 4WC4|1|B | Title: tRNA-processing enzyme complex 2 | X-RAY DIFFRACTION | 3.5 | 74 | ||
| 3 | 4WC5|1|B | Title: Structure of tRNA-processing enzyme complex 3 | X-RAY DIFFRACTION | 3.41 | 74 | ||
| 4 | 4WC7|1|B | Title: Structure of tRNA-processing enzyme complex 5 | X-RAY DIFFRACTION | 3.1 | 75 | ||
| 5 | 4WC2|1|B | Title: Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog | X-RAY DIFFRACTION | 2.8 | 75 | ||
| 6 | 4WC6|1|B | Title: Structure of tRNA-processing enzyme complex 4 | X-RAY DIFFRACTION | 3.41 | 75 | ||
| 7 | 4WC3|1|B | Title: Structure of tRNA-processing enzyme complex 1 | X-RAY DIFFRACTION | 3.1 | 76 | ||
| 8 | 4X0B|1|B | Title: Structure of tRNA-processing enzyme complex 7 | X-RAY DIFFRACTION | 3.2 | 77 | ||
| 9 | 1VFG|1|C | Title: Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog | X-RAY DIFFRACTION | 2.8 | 31 | ||
| 10 | 1VFG|1|D | Title: Crystal structure of tRNA nucleotidyltransferase complexed with a primer tRNA and an incoming ATP analog | X-RAY DIFFRACTION | 2.8 | 34 | ||
| 11 | 3WFQ|1|D | Title: tRNA processing enzyme complex 1 | X-RAY DIFFRACTION | 3.62 | 73 | ||
| 12 | 3WFQ|1|C | Title: tRNA processing enzyme complex 1 | X-RAY DIFFRACTION | 3.62 | 73 | ||
| 13 | 3WFR|1|C | Title: tRNA processing enzyme complex 2 | X-RAY DIFFRACTION | 3.5 | 76 | ||
| 14 | 3WFR|1|D | Title: tRNA processing enzyme complex 2 | X-RAY DIFFRACTION | 3.5 | 76 | ||
| 15 | 3WFR|1|A | Title: tRNA processing enzyme complex 2 | X-RAY DIFFRACTION | 3.5 | 75 | ||
| 16 | 3WFQ|1|B | Title: tRNA processing enzyme complex 1 | X-RAY DIFFRACTION | 3.62 | 73 | ||
| 17 | 3WFQ|1|A | Title: tRNA processing enzyme complex 1 | X-RAY DIFFRACTION | 3.62 | 73 | ||
| 18 | 3WFR|1|B | Title: tRNA processing enzyme complex 2 | X-RAY DIFFRACTION | 3.5 | 75 | ||
| 19 | 3WFS|1|B | Title: tRNA processing enzyme complex 3 | X-RAY DIFFRACTION | 3.31 | 74 | ||
| 20 | 3WFS|1|A | Title: tRNA processing enzyme complex 3 | X-RAY DIFFRACTION | 3.31 | 74 | ||
| 21 | 5HC9|1|D | Title: Thermotoga maritima CCA-adding enzyme complexed with tRNA_CCA | X-RAY DIFFRACTION | 2.9 | 76 | ||
| 22 | 5HC9|1|C | Title: Thermotoga maritima CCA-adding enzyme complexed with tRNA_CCA | X-RAY DIFFRACTION | 2.9 | 76 |
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