Equivalence class NR_4.0_72148.3 Current
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 2G8I|1|B (rep) | 5'-R(*UP*CP*GP*AP*CP*A)-3' | B. halodurans RNase H catalytic domain D192N mutant in complex with Mn2+ and RNA/DNA hybrid (non-P nick at the active site) | X-ray diffraction | 1.65 | 2006-04-25 | ||||
| 2 | 2G8F|1|B | 5'-R(*UP*CP*GP*AP*CP*A)-3' | B. halodurans RNase H catalytic domain E188A mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site) | X-ray diffraction | 1.65 | 2006-04-25 | ||||
| 3 | 5USG|1|B | RNA (5'-R(*UP*CP*GP*AP*CP*A)-3') | synthetic construct | Synthetic | 5-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant | X-ray diffraction | 1.7 | 2017-03-08 | ||
| 4 | 3ULD|1|B | RNA (5'-R(*UP*CP*GP*AP*CP*A)-3') | High resolution structure of DNA/RNA hybrid in complex with RNase H catalytic domain D132N mutant | X-ray diffraction | 1.6 | 2012-11-14 | ||||
| 5 | 2G8K|1|B | 5'-R(*UP*CP*GP*AP*CP*A)-3' | B. halodurans RNase H catalytic domain D192N mutant in complex with Ca2+ and RNA/DNA hybrid (non-P nick at the active site) | X-ray diffraction | 1.65 | 2006-04-25 | ||||
| 6 | 3TWH|1|B | RNA (5'-R(*UP*CP*GP*AP*CP*A)-3') | Selenium Derivatized RNA/DNA Hybrid in complex with RNase H Catalytic Domain D132N Mutant | X-ray diffraction | 1.79 | 2012-10-03 | ||||
| 7 | 5USA|1|B | RNA (5'-R(*UP*CP*GP*AP*CP*A)-3') | synthetic construct | Synthetic | 5-Se-T2-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant | X-ray diffraction | 1.8 | 2017-03-08 | ||
| 8 | 5WJR|1|B | RNA (5'-R(*UP*CP*GP*AP*CP*A)-3') | synthetic construct | Synthetic | 2-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant | X-ray diffraction | 1.7 | 2017-08-09 | ||
| 9 | 5W7O|1|B | RNA (5'-R(*UP*CP*GP*AP*CP*A)-3') | synthetic construct | Synthetic | 2-Se-T4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant | X-ray diffraction | 1.75 | 2017-06-28 | ||
| 10 | 5USE|1|B | RNA (5'-R(*UP*CP*GP*AP*CP*A)-3') | synthetic construct | Synthetic | 5-Se-T4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant | X-ray diffraction | 1.73 | 2017-03-08 | ||
| 11 | 5US2|1|B | RNA (5'-R(*UP*CP*GP*AP*CP*A)-3') | synthetic construct | Synthetic | 2-Se-T2-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant | X-ray diffraction | 1.9 | 2017-03-08 | ||
| 12 | 5W7N|1|B | RNA (5'-R(*UP*CP*GP*AP*CP*A)-3') | synthetic construct | Synthetic | 2-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant | X-ray diffraction | 1.8 | 2017-06-28 | ||
| 13 | 2G8H|1|B | 5'-R(*UP*CP*GP*AP*CP*A)-3' | B. halodurans RNase H catalytic domain D192N mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site) | X-ray diffraction | 1.85 | 2006-04-25 | ||||
| 14 | 2R7Y|1|B | RNA (5'-R(*UP*CP*GP*AP*CP*A)-3') | Selenium Derivatized RNA/DNA Hybrid in complex with RNase H CATALYTIC DOMAIN MUTANT D132N | X-ray diffraction | 1.8 | 2008-05-06 | ||||
| 15 | 2G8V|1|B | 5'-R(P*UP*CP*GP*AP*CP*A)-3' | B. halodurans RNase H catalytic domain E188A mutant in complex with Mg2+ and RNA/DNA hybrid (reaction product) | X-ray diffraction | 1.85 | 2006-04-25 | ||||
| 16 | 2G8W|1|B | 5'-R(P*UP*CP*GP*AP*CP*A)-3' | B. halodurans RNase H catalytic domain E188A mutant in complex with Ca2+ and RNA/DNA hybrid | X-ray diffraction | 2.05 | 2006-04-25 | ||||
| 17 | 2G8U|1|B | 5'-R(*UP*CP*GP*AP*CP*A)-3' | B. halodurans RNase H catalytic domain D132N mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site) | X-ray diffraction | 2.7 | 2006-04-25 |
Release history
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 2G8W|1|B | Title: B. halodurans RNase H catalytic domain E188A mutant in complex with Ca2+ and RNA/DNA hybrid | X-RAY DIFFRACTION | 2.05 | 6 | ||
| 2 | 3ULD|1|B | Title: High resolution structure of DNA/RNA hybrid in complex with RNase H catalytic domain D132N mutant | X-RAY DIFFRACTION | 1.6 | 6 | ||
| 3 | 5USA|1|B | Title: 5-Se-T2-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant | X-RAY DIFFRACTION | 1.8 | 6 | ||
| 4 | 5W7O|1|B | Title: 2-Se-T4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant | X-RAY DIFFRACTION | 1.75 | 6 | ||
| 5 | 5USE|1|B | Title: 5-Se-T4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant | X-RAY DIFFRACTION | 1.73 | 6 | ||
| 6 | 5USG|1|B | Title: 5-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant | X-RAY DIFFRACTION | 1.7 | 6 | ||
| 7 | 5WJR|1|B | Title: 2-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant | X-RAY DIFFRACTION | 1.7 | 6 | ||
| 8 | 2G8K|1|B | Title: B. halodurans RNase H catalytic domain D192N mutant in complex with Ca2+ and RNA/DNA hybrid (non-P nick at the active site) | X-RAY DIFFRACTION | 1.65 | 6 | ||
| 9 | 2G8F|1|B | Title: B. halodurans RNase H catalytic domain E188A mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site) | X-RAY DIFFRACTION | 1.65 | 6 | ||
| 10 | 2G8I|1|B | Title: B. halodurans RNase H catalytic domain D192N mutant in complex with Mn2+ and RNA/DNA hybrid (non-P nick at the active site) | X-RAY DIFFRACTION | 1.65 | 6 | ||
| 11 | 2G8H|1|B | Title: B. halodurans RNase H catalytic domain D192N mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site) | X-RAY DIFFRACTION | 1.85 | 6 | ||
| 12 | 5W7N|1|B | Title: 2-Se-T2/4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant | X-RAY DIFFRACTION | 1.8 | 6 | ||
| 13 | 2G8U|1|B | Title: B. halodurans RNase H catalytic domain D132N mutant in complex with Mg2+ and RNA/DNA hybrid (non-P nick at the active site) | X-RAY DIFFRACTION | 2.7 | 6 | ||
| 14 | 2G8V|1|B | Title: B. halodurans RNase H catalytic domain E188A mutant in complex with Mg2+ and RNA/DNA hybrid (reaction product) | X-RAY DIFFRACTION | 1.85 | 6 | ||
| 15 | 3TWH|1|B | Title: Selenium Derivatized RNA/DNA Hybrid in complex with RNase H Catalytic Domain D132N Mutant | X-RAY DIFFRACTION | 1.79 | 6 | ||
| 16 | 2R7Y|1|B | Title: Selenium Derivatized RNA/DNA Hybrid in complex with RNase H CATALYTIC DOMAIN MUTANT D132N | X-RAY DIFFRACTION | 1.8 | 6 | ||
| 17 | 5US2|1|B | Title: 2-Se-T2-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant | X-RAY DIFFRACTION | 1.9 | 6 |
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