Equivalence class NR_4.0_71388.3 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 6EK0|1|L5+ 6EK0|1|L8 (rep) | Large subunit ribosomal RNA + Large subunit ribosomal RNA fragment | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | High-resolution cryo-EM structure of the human 80S ribosome | Electron microscopy | 2.9 | 2018-01-24 | |
| 2 | 5T2C|1|A+ 5T2C|1|C | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S rRNA, 5.8S rRNA | Homo sapiens | Eukarya | RF02543 + RF00002 | CryoEM structure of the human ribosome at 3.6 Angstrom resolution | Electron microscopy | 3.6 | 2017-01-25 |
| 3 | 4UG0|1|L5+ 4UG0|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | STRUCTURE OF THE HUMAN 80S RIBOSOME | Electron microscopy | 3.6 | 2015-06-10 |
| 4 | 5AJ0|1|A2+ 5AJ0|1|A3 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Cryo electron microscopy of actively translating human polysomes (POST state). | Electron microscopy | 3.5 | 2015-05-20 |
| 5 | 5LKS|1|L5+ 5LKS|1|L8 | Large subunit ribosomal RNA + 5.8S ribosomal RNA | 28S ribosomal RNA, 5.8S ribosomal RNA | Homo sapiens | Eukarya | RF02543 + RF00002 | Structure-function insights reveal the human ribosome as a cancer target for antibiotics | Electron microscopy | 3.6 | 2017-04-26 |
| 6 | 5A8L|1|A | Large subunit ribosomal RNA | 28S RIBOSOMAL RNA | Homo sapiens | Eukarya | RF02543 | Human eRF1 and the hCMV nascent peptide in the translation termination complex | Electron microscopy | 3.8 | 2015-12-02 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_4.0_71388.3 | NR_4.0_71388.2 | 9.12 | (5) 5T2C|1|A+5T2C|1|C, 5LKS|1|L5+5LKS|1|L8, 5AJ0|1|A2+5AJ0|1|A3, 5A8L|1|A, 4UG0|1|L5+4UG0|1|L8 | (1) 6EK0|1|L5+6EK0|1|L8 | (0) |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_4.0_71388.3 | NR_4.0_71388.4 | 9.16 | (5) 4UG0|1|L5+4UG0|1|L8, 5AJ0|1|A2+5AJ0|1|A3, 5T2C|1|A+5T2C|1|C, 5A8L|1|A, 5LKS|1|L5+5LKS|1|L8 | (1) 6EK0|1|L5+6EK0|1|L8 | (0) |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length | NAKB_NA_annotation | NAKB_protein_annotation |
|---|---|---|---|---|---|---|---|
| 1 | 6EK0|1|L5+6EK0|1|L8 | Title: High-resolution cryo-EM structure of the human 80S ribosome | ELECTRON MICROSCOPY | 2.9 | 3672 | ||
| 2 | 5AJ0|1|A2+5AJ0|1|A3 | Title: Cryo electron microscopy of actively translating human polysomes (POST state). | ELECTRON MICROSCOPY | 3.5 | 3612 | ||
| 3 | 5LKS|1|L5+5LKS|1|L8 | Title: Structure-function insights reveal the human ribosome as a cancer target for antibiotics | ELECTRON MICROSCOPY | 3.6 | 3776 | ||
| 4 | 5T2C|1|A+5T2C|1|C | Title: CryoEM structure of the human ribosome at 3.6 Angstrom resolution | ELECTRON MICROSCOPY | 3.6 | 3776 | ||
| 5 | 4UG0|1|L5+4UG0|1|L8 | Title: STRUCTURE OF THE HUMAN 80S RIBOSOME | ELECTRON MICROSCOPY | 3.6 | 3776 | ||
| 6 | 5A8L|1|A | Title: Human eRF1 and the hCMV nascent peptide in the translation termination complex | ELECTRON MICROSCOPY | 3.8 | 253 |
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